Carg15465 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15465
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_069 : 298683 .. 299671 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGGTATATATTCTCTGTTTCTTCGTTCGATTCTGCTTGTGTTTCTTACTGCTCTGTCTGCAACTCATCTTCGAAATCTCGAGATCGATTTCATGTTGCGTTTCTGTTTAACGGATTCGGCGAAGCCATATTGTTGTAATTTGTGTTAGTTTGAATGATTTCAGTATTCACAGTCAATTGATTCCTAATCCATGTGATATATTTCAGATTTTCGATTCACTTCTTAGTATATTAATTGATTAATCTATCAAGTTTATTTCAATCGGTGAACCTGTGATGATGAACACATGGAATCACAAAAATCAATCGAAACATTTCTTTGGACGAATAGTGAGTAGCAAAAGATAAGTCTCAAGTCAAGTGATGGTAAGCGTTAGGTCAAATTATTCATACATTATTATTTCATGTGGGTCAGGTTATTTATTATATATTTATAAGTATTTTCAAAGTGGGTGGATTTTCTCATTGGTTCATATCATTCCTTCGTATTTTCAATTCATCTCTTTATGCTACCAAATATGCTCCACCAAACATTTCTTTTTCCGTTTAATTGCAAATTAATCCTTATAATTTCAAATATTAAAATTATTCCATATTATTTGCTAAAATTTCTTATAACTAGTTTCTTCCTTTTAAATATTAAATACAAAATTTTAATTTTTTTTAATTTTTTTTTGTAGGGTATAG

mRNA sequence

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGGGTATAG

Coding sequence (CDS)

ATGAGTCAGATTTCAGAAACCGAAGCACAGAAAGGTAGGAATTATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTTCTTCTACTATCCCCCGGCCTTCTGTTTCAAGTCCCCGGCCACCATCATTTCATCCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTCGCCCTAATTTGCCTCTTCACCTTCGTCCTTCAACTTCACATCTACCTCTAATCCTCCCTAATCGCAATCGCAATCGCAATCGGATCGCGCTTCTTCGAAATTCCAGGGTATAG

Protein sequence

MSQISETEAQKGRNYGGLGPSFRGCGSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNLPLHLRPSTSHLPLILPNRNRNRNRIALLRNSRV

Homology

[Close]

BLAST of Carg15465 vs. NCBI nr
Match: KGN53046.1 (hypothetical protein Csa_4G012420 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 18 LGPSFRGCGSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNLPLHLRPS 77
          LGPSFRGCGS+  +IPRPS+ +PRP     VRQLPNQRRLHFHPFPHLL PN PLHLR S
Sbjct: 26 LGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNFPLHLRHS 85

Query: 78 TSHLPLILP 87
          TSHL LI+P
Sbjct: 86 TSHLHLIIP 94

[Close]

BLAST of Carg15465 vs. TrEMBL
Match: tr|A0A0A0KYY0|A0A0A0KYY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012420 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 18 LGPSFRGCGSVSSTIPRPSVSSPRPPSFHPVRQLPNQRRLHFHPFPHLLRPNLPLHLRPS 77
          LGPSFRGCGS+  +IPRPS+ +PRP     VRQLPNQRRLHFHPFPHLL PN PLHLR S
Sbjct: 26 LGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNFPLHLRHS 85

Query: 78 TSHLPLILP 87
          TSHL LI+P
Sbjct: 86 TSHLHLIIP 94

The following BLAST results are available for this feature:

BLAST of Carg15465 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53046.1	2.2e-20	75.36	hypothetical protein Csa_4G012420 [Cucumis sativus]	[more]

BLAST of Carg15465 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg15465 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15465 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYY0\|A0A0A0KYY0_CUCSA	1.4e-20	75.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15465-RA	Carg15465-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15465	Csa4G012420	Cucumber (Chinese Long) v2	carcuB0716
Carg15465	CmaCh06G016690	Cucurbita maxima (Rimu)	carcmaB0974
Carg15465	CmoCh06G016620	Cucurbita moschata (Rifu)	carcmoB0947

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15465	Silver-seed gourd	carcarB142
Carg15465	Cucumber (Gy14) v2	carcgybB0693
Carg15465	Cucumber (Gy14) v1	carcgyB0775
Carg15465	Cucurbita maxima (Rimu)	carcmaB0972
Carg15465	Cucurbita moschata (Rifu)	carcmoB0946
Carg15465	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15465	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15465	Wild cucumber (PI 183967)	carcpiB0730
Carg15465	Cucumber (Chinese Long) v3	carcucB0733
Carg15465	Bottle gourd (USVL1VR-Ls)	carlsiB634
Carg15465	Melon (DHL92) v3.5.1	carmeB0694
Carg15465	Melon (DHL92) v3.6.1	carmedB0707
Carg15465	Watermelon (Charleston Gray)	carwcgB0670
Carg15465	Watermelon (97103) v1	carwmB0690
Carg15465	Watermelon (97103) v2	carwmbB0722
Carg15465	Wax gourd	carwgoB0815