Csa4G012420 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G012420
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 1862852 .. 1863282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGAAGCTAAGC

mRNA sequence

ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGA

Coding sequence (CDS)

ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGA

Protein sequence

MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLCLYNLSGWIFVFYEFVGRVVE*

Homology

[Close]

BLAST of Csa4G012420 vs. TrEMBL
Match: A0A0A0KYY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60
           MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP
Sbjct: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60

Query: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120
           NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC
Sbjct: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120

Query: 121 LYNLSGWIFVFYEFVGRVVE 141
           LYNLSGWIFVFYEFVGRVVE
Sbjct: 121 LYNLSGWIFVFYEFVGRVVE 140

[Close]

BLAST of Csa4G012420 vs. NCBI nr
Match: gi|700197888|gb|KGN53046.1| (hypothetical protein Csa_4G012420 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 7.2e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60
           MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP
Sbjct: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60

Query: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120
           NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC
Sbjct: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120

Query: 121 LYNLSGWIFVFYEFVGRVVE 141
           LYNLSGWIFVFYEFVGRVVE
Sbjct: 121 LYNLSGWIFVFYEFVGRVVE 140

The following BLAST results are available for this feature:

BLAST of Csa4G012420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYY0_CUCSA	5.0e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1	[more]

BLAST of Csa4G012420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197888\|gb\|KGN53046.1\|	7.2e-79	100.00	hypothetical protein Csa_4G012420 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU109229	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G012420.1	Csa4G012420.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU109229	CU109229	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G012420	Bhi01G002154	Wax gourd	cuwgoB370
Csa4G012420	CmaCh06G016690	Cucurbita maxima (Rimu)	cmacuB835
Csa4G012420	CmoCh06G016620	Cucurbita moschata (Rifu)	cmocuB823
Csa4G012420	Carg15465	Silver-seed gourd	carcuB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G012420	Cucumber (Gy14) v2	cgybcuB165
Csa4G012420	Cucumber (Gy14) v2	cgybcuB172
Csa4G012420	Melon (DHL92) v3.6.1	cumedB297
Csa4G012420	Silver-seed gourd	carcuB0128
Csa4G012420	Watermelon (97103) v2	cuwmbB317
Csa4G012420	Cucumber (Gy14) v1	cgycuB102
Csa4G012420	Cucurbita maxima (Rimu)	cmacuB260
Csa4G012420	Cucurbita moschata (Rifu)	cmocuB245
Csa4G012420	Melon (DHL92) v3.5.1	cumeB312
Csa4G012420	Melon (DHL92) v3.5.1	cumeB320
Csa4G012420	Watermelon (Charleston Gray)	cuwcgB320
Csa4G012420	Watermelon (97103) v1	cuwmB313
Csa4G012420	Cucurbita pepo (Zucchini)	cpecuB615
Csa4G012420	Cucurbita pepo (Zucchini)	cpecuB869
Csa4G012420	Bottle gourd (USVL1VR-Ls)	culsiB303