Csa4G012420.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G012420.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 1862852 .. 1863282 (-)
Sequence length423
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGAAGCTAAGC

mRNA sequence

ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGA

Coding sequence (CDS)

ATGAGTCGTAAACCACATAATAGAAAGAAAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATGAATTTGTCGGCCGCGTAGTAGAGTGA

Protein sequence

MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLPNQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLCLYNLSGWIFVFYEFVGRVVE*
Homology
[Close]
BLAST of Csa4G012420.1 vs. TrEMBL
Match: A0A0A0KYY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60
           MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP
Sbjct: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60

Query: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120
           NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC
Sbjct: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120

Query: 121 LYNLSGWIFVFYEFVGRVVE 141
           LYNLSGWIFVFYEFVGRVVE
Sbjct: 121 LYNLSGWIFVFYEFVGRVVE 140

[Close]
BLAST of Csa4G012420.1 vs. NCBI nr
Match: gi|700197888|gb|KGN53046.1| (hypothetical protein Csa_4G012420 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 7.2e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

Query: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60
           MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP
Sbjct: 1   MSRKPHNRKKRKEKRRESKEENNGGLGPSFRGCGSLPPSIPRPSLPNPRPQQLRSVRQLP 60

Query: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120
           NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC
Sbjct: 61  NQRRLHFHPFPHLLCPNFPLHLRHSTSHLHLIIPKSNSDSSSISNFQVHTLCFFCFRLLC 120

Query: 121 LYNLSGWIFVFYEFVGRVVE 141
           LYNLSGWIFVFYEFVGRVVE
Sbjct: 121 LYNLSGWIFVFYEFVGRVVE 140

The following BLAST results are available for this feature:
BLAST of Csa4G012420.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYY0_CUCSA5.0e-79100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012420 PE=4 SV=1[more]
BLAST of Csa4G012420.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197888|gb|KGN53046.1|7.2e-79100.00hypothetical protein Csa_4G012420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G012420Csa4G012420gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G012420.1Csa4G012420.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G012420.1.utr3p1Csa4G012420.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G012420.1.cds1Csa4G012420.1.cds1CDS