Cla012300 (gene) Watermelon (97103) v1

Overview
NameCla012300
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 18813585 .. 18813785 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

mRNA sequence

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

Coding sequence (CDS)

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

Protein sequence

MASTSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVADYDFAPAA
Homology
[Close]
BLAST of Cla012300 vs. TrEMBL
Match: A0A0A0LUD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.7e-17
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPPP   LP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDRC-HGGKNYLDPPPPPP---LPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

[Close]
BLAST of Cla012300 vs. NCBI nr
Match: gi|700210307|gb|KGN65403.1| (hypothetical protein Csa_1G409740 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPPP   LP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDRC-HGGKNYLDPPPPPP---LPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

The following BLAST results are available for this feature:
BLAST of Cla012300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD7_CUCSA9.7e-1773.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1[more]
BLAST of Cla012300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210307|gb|KGN65403.1|1.4e-1673.13hypothetical protein Csa_1G409740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012300Cla012300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla012300Cla97C06G119830Watermelon (97103) v2wmwmbB406
Cla012300ClCG06G010590Watermelon (Charleston Gray)wcgwmB344
Cla012300CsaV3_1G031070Cucumber (Chinese Long) v3cucwmB095
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla012300Melon (DHL92) v3.6.1medwmB249
Cla012300Melon (DHL92) v3.6.1medwmB288
Cla012300Melon (DHL92) v3.6.1medwmB425
Cla012300Silver-seed gourdcarwmB0040
Cla012300Silver-seed gourdcarwmB0042
Cla012300Silver-seed gourdcarwmB0126
Cla012300Silver-seed gourdcarwmB0570
Cla012300Cucumber (Chinese Long) v3cucwmB180
Cla012300Cucumber (Chinese Long) v3cucwmB646
Cla012300Watermelon (97103) v2wmwmbB390
Cla012300Wax gourdwgowmB152
Cla012300Wax gourdwgowmB649
Cla012300Wax gourdwgowmB684
Cla012300Watermelon (97103) v1wmwmB034
Cla012300Watermelon (97103) v1wmwmB165
Cla012300Cucumber (Gy14) v1cgywmB177
Cla012300Cucurbita maxima (Rimu)cmawmB071
Cla012300Cucurbita maxima (Rimu)cmawmB138
Cla012300Cucurbita maxima (Rimu)cmawmB143
Cla012300Cucurbita maxima (Rimu)cmawmB775
Cla012300Cucurbita moschata (Rifu)cmowmB063
Cla012300Cucurbita moschata (Rifu)cmowmB124
Cla012300Cucurbita moschata (Rifu)cmowmB128
Cla012300Cucurbita moschata (Rifu)cmowmB769
Cla012300Melon (DHL92) v3.5.1mewmB257
Cla012300Melon (DHL92) v3.5.1mewmB293
Cla012300Melon (DHL92) v3.5.1mewmB439
Cla012300Watermelon (Charleston Gray)wcgwmB111
Cla012300Cucumber (Chinese Long) v2cuwmB084
Cla012300Cucumber (Chinese Long) v2cuwmB168
Cla012300Cucumber (Chinese Long) v2cuwmB615
Cla012300Cucurbita pepo (Zucchini)cpewmB128
Cla012300Cucurbita pepo (Zucchini)cpewmB372
Cla012300Cucurbita pepo (Zucchini)cpewmB679
Cla012300Cucurbita pepo (Zucchini)cpewmB681
Cla012300Bottle gourd (USVL1VR-Ls)lsiwmB120
Cla012300Bottle gourd (USVL1VR-Ls)lsiwmB225
Cla012300Bottle gourd (USVL1VR-Ls)lsiwmB415
Cla012300Cucumber (Gy14) v2cgybwmB083
Cla012300Cucumber (Gy14) v2cgybwmB161