ClCG06G010590 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G010590
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 22806381 .. 22806581 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

mRNA sequence

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

Coding sequence (CDS)

ATGGCTTCCACTTCAAAGCCCTTTGAATCCATTTGCAGCAACATCCATGGAGATCATAGCAGCCATGGCGGTAGGAACTACCTGGACCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCACCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTGTTGCAGATTATGACTTTGCTCCGGCAGCGTGA

Protein sequence

MASTSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVADYDFAPAA
Homology
[Close]
BLAST of ClCG06G010590 vs. TrEMBL
Match: A0A0A0LUD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.7e-17
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPPP   LP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDRC-HGGKNYLDPPPPPP---LPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

[Close]
BLAST of ClCG06G010590 vs. NCBI nr
Match: gi|700210307|gb|KGN65403.1| (hypothetical protein Csa_1G409740 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 1 

Query: 1  MAS-TSKPFESICSNIHGDHSSHGGRNYLDPPPPPPPLPLPPPLPQPSIDIGGGGSIVAD 60
          MAS +S+ F+S   N HGD   HGG+NYLDPPPPPP   LP PLPQP IDIGGGGSIVAD
Sbjct: 1  MASISSELFQSNLKNSHGDRC-HGGKNYLDPPPPPP---LPLPLPQPHIDIGGGGSIVAD 60

Query: 61 YDFAPAA 67
          YDFAPAA
Sbjct: 61 YDFAPAA 63

The following BLAST results are available for this feature:
BLAST of ClCG06G010590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD7_CUCSA9.7e-1773.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1[more]
BLAST of ClCG06G010590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210307|gb|KGN65403.1|1.4e-1673.13hypothetical protein Csa_1G409740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G010590.1ClCG06G010590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G010590Cla012300Watermelon (97103) v1wcgwmB344
ClCG06G010590Cla97C06G119830Watermelon (97103) v2wcgwmbB273
ClCG06G010590CsaV3_1G031070Cucumber (Chinese Long) v3cucwcgB078
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G010590Silver-seed gourdcarwcgB0041
ClCG06G010590Silver-seed gourdcarwcgB0043
ClCG06G010590Silver-seed gourdcarwcgB0125
ClCG06G010590Silver-seed gourdcarwcgB0557
ClCG06G010590Cucumber (Chinese Long) v3cucwcgB156
ClCG06G010590Cucumber (Chinese Long) v3cucwcgB591
ClCG06G010590Watermelon (97103) v2wcgwmbB258
ClCG06G010590Watermelon (97103) v2wcgwmbB278
ClCG06G010590Wax gourdwcgwgoB507
ClCG06G010590Wax gourdwcgwgoB538
ClCG06G010590Wax gourdwcgwgoB547
ClCG06G010590Watermelon (Charleston Gray)wcgwcgB026
ClCG06G010590Watermelon (Charleston Gray)wcgwcgB071
ClCG06G010590Cucumber (Gy14) v1cgywcgB174
ClCG06G010590Cucurbita maxima (Rimu)cmawcgB071
ClCG06G010590Cucurbita maxima (Rimu)cmawcgB135
ClCG06G010590Cucurbita maxima (Rimu)cmawcgB167
ClCG06G010590Cucurbita maxima (Rimu)cmawcgB708
ClCG06G010590Cucurbita moschata (Rifu)cmowcgB064
ClCG06G010590Cucurbita moschata (Rifu)cmowcgB115
ClCG06G010590Cucurbita moschata (Rifu)cmowcgB119
ClCG06G010590Cucurbita moschata (Rifu)cmowcgB158
ClCG06G010590Cucurbita moschata (Rifu)cmowcgB712
ClCG06G010590Wild cucumber (PI 183967)cpiwcgB076
ClCG06G010590Wild cucumber (PI 183967)cpiwcgB151
ClCG06G010590Wild cucumber (PI 183967)cpiwcgB592
ClCG06G010590Cucumber (Chinese Long) v2cuwcgB071
ClCG06G010590Cucumber (Chinese Long) v2cuwcgB148
ClCG06G010590Melon (DHL92) v3.5.1mewcgB216
ClCG06G010590Melon (DHL92) v3.5.1mewcgB258
ClCG06G010590Melon (DHL92) v3.5.1mewcgB396
ClCG06G010590Watermelon (97103) v1wcgwmB342
ClCG06G010590Cucurbita pepo (Zucchini)cpewcgB120
ClCG06G010590Cucurbita pepo (Zucchini)cpewcgB335
ClCG06G010590Cucurbita pepo (Zucchini)cpewcgB616
ClCG06G010590Cucurbita pepo (Zucchini)cpewcgB618
ClCG06G010590Bottle gourd (USVL1VR-Ls)lsiwcgB107
ClCG06G010590Bottle gourd (USVL1VR-Ls)lsiwcgB203
ClCG06G010590Bottle gourd (USVL1VR-Ls)lsiwcgB373
ClCG06G010590Cucumber (Gy14) v2cgybwcgB067
ClCG06G010590Cucumber (Gy14) v2cgybwcgB140
ClCG06G010590Cucumber (Gy14) v2cgybwcgB523
ClCG06G010590Melon (DHL92) v3.6.1medwcgB208
ClCG06G010590Melon (DHL92) v3.6.1medwcgB249
ClCG06G010590Melon (DHL92) v3.6.1medwcgB386