CsaV3_1G031070 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G031070
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 18249468 .. 18250080 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCAGCCTTCTCCTTTTACTTACCTTTCCCTTTTCGTCTCTTTTTGTGCTCATCTCATTTCTTAATCGAGGCTAACAAAATAAACAATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGAATAAAGAGAGATCAAATACATGATTACAAGATAACATAATGTCTCTTTGGCTGATAAGTTTGAAGTAAGAGCGGTAATAAATATTTTTTATCTTCTGAGTTATGTTTAGATTGACTAGCCATATATTGTATTAGATATATTTTAACTATTTTTGGAACCCAAAAGAGTGTGGAAATAATTGATGAGTAAAGAGTATGAGATTAAAGATTATTTCCCTTTTATTTTCAGGGGTTTTATTTCAATTCTTATCTTTTAACATTATTTTTAGTTCAAATCGTTGGAAAATGTATGCTATTTGTACAGCTTATTTAGTTCTCAAAATAGTAAAAAGCG

mRNA sequence

ATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGA

Coding sequence (CDS)

ATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGA

Protein sequence

MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPPPLPLPLPQPHIDIGGGGSIVADYDFAPAA

Homology

[Close]

BLAST of CsaV3_1G031070 vs. NCBI nr
Match: KGN65403.1 (hypothetical protein Csa_1G409740 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA 60
          MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA
Sbjct: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA 60

Query: 61 PAA 64
          PAA
Sbjct: 61 PAA 63

[Close]

BLAST of CsaV3_1G031070 vs. TrEMBL
Match: tr|A0A0A0LUD7|A0A0A0LUD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA 60
          MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA
Sbjct: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPXXXXXXXXXXXXXXXXXXXXXXIVADYDFA 60

Query: 61 PAA 64
          PAA
Sbjct: 61 PAA 63

The following BLAST results are available for this feature:

BLAST of CsaV3_1G031070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65403.1	3.0e-12	100.00	hypothetical protein Csa_1G409740 [Cucumis sativus]	[more]

BLAST of CsaV3_1G031070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G031070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G031070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUD7\|A0A0A0LUD7_CUCSA	2.0e-12	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G031070.1	CsaV3_1G031070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G031070	CSPI01G19800	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G031070	Cla012300	Watermelon (97103) v1	cucwmB095
CsaV3_1G031070	MELO3C025287	Melon (DHL92) v3.5.1	cucmeB058
CsaV3_1G031070	ClCG06G010590	Watermelon (Charleston Gray)	cucwcgB078
CsaV3_1G031070	Lsi06G009170	Bottle gourd (USVL1VR-Ls)	cuclsiB072
CsaV3_1G031070	MELO3C025287.2	Melon (DHL92) v3.6.1	cucmedB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G031070	Silver-seed gourd	carcucB0040
CsaV3_1G031070	Silver-seed gourd	carcucB0144
CsaV3_1G031070	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G031070	Cucurbita maxima (Rimu)	cmacucB0073
CsaV3_1G031070	Cucurbita maxima (Rimu)	cmacucB0116
CsaV3_1G031070	Cucurbita moschata (Rifu)	cmocucB0060
CsaV3_1G031070	Cucurbita moschata (Rifu)	cmocucB0104
CsaV3_1G031070	Cucurbita pepo (Zucchini)	cpecucB0434
CsaV3_1G031070	Cucurbita pepo (Zucchini)	cpecucB0800
CsaV3_1G031070	Watermelon (97103) v2	cucwmbB067
CsaV3_1G031070	Wax gourd	cucwgoB108