Cucsa.232830 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.232830
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01989 : 624026 .. 624709 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGACTCTTTACGCAAAGAAAAACTCTAAGAAGACAAAGAAATTATTATCATCAATTACCAACTCTATATAAAGACTTCTTCCACAAAGCAAAACTCTAAAGGCACAAACAAATTATTATCACAGACATCAGAGGTTGGCTTTTTGACAAAGTACCCCGCTCTCGATCGTATCATTCAATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGATGAATCGAGACCATGTAAATCTATTTTCAATTTATGTGTTTGTTTGTTTTCAATCAATAAATGGTTTATGCTACCATAATTGAGCGCGTTATGCTCAAATTTATGTGTTTGTTTGTTTGTTTTGTTATACTTTTGTTGTCTGTATGCAGAATATTGATGTCTCTCCCTCTCTAATTTATGAATATATATGTTTCAACTTTACA

mRNA sequence

TAGACTCTTTACGCAAAGAAAAACTCTAAGAAGACAAAGAAATTATTATCATCAATTACCAACTCTATATAAAGACTTCTTCCACAAAGCAAAACTCTAAAGGCACAAACAAATTATTATCACAGACATCAGAGGTTGGCTTTTTGACAAAGTACCCCGCTCTCGATCGTATCATTCAATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGATGAATCGAGACCATGTAAATCTATTTTCAATTTATGTGTTTGTTTGTTTTCAATCAATAAATGGTTTATGCTACCATAATTGAGCGCGTTATGCTCAAATTTATGTGTTTGTTTGTTTGTTTTGTTATACTTTTGTTGTCTGTATGCAGAATATTGATGTCTCTCCCTCTCTAATTTATGAATATATATGTTTCAACTTTACA

Coding sequence (CDS)

ATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGA

Protein sequence

MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR*
Homology
[Close]
BLAST of Cucsa.232830 vs. TrEMBL
Match: A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 101
           RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR
Sbjct: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 100

[Close]
BLAST of Cucsa.232830 vs. TrEMBL
Match: A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60

Query: 61 RDDDGKVD--QDELEKLIDCVIRFQT 85
          +D DGKVD  + E+E LID V+RFQT
Sbjct: 61 KDGDGKVDLGEAEMENLIDYVMRFQT 85

[Close]
BLAST of Cucsa.232830 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M+ SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MATSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFAD 60

Query: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 89
          +D DG VD +  E++ L+D V+RFQ  K V
Sbjct: 61 KDGDGAVDLEGGEIDSLVDYVMRFQASKDV 89

[Close]
BLAST of Cucsa.232830 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 6  SQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDG 65
          S+ N SR+EM K+IF E+D+DGDG L+  E+++AM  +G  I F    +G+++ D + DG
Sbjct: 7  SKFNFSREEM-KEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDG 66

Query: 66 KVDQDELEKLIDCVIRFQTRKR 88
           + +DEL+KLID   RFQ R+R
Sbjct: 67 LISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of Cucsa.232830 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          MS + ++L LSR++ IK+IF E+D+DGDG L+  E+++A    G  + F    +G++ AD
Sbjct: 1  MSRAATRLQLSRED-IKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHAD 60

Query: 61 RDDDGKVDQDELEKLIDCVIRFQTRKRVC 90
           + DG ++++EL+KL+D   +FQ  KR C
Sbjct: 61 ENGDGFIEEEELDKLVDYAQKFQ-HKRKC 87

[Close]
BLAST of Cucsa.232830 vs. TAIR10
Match: AT3G50360.1 (AT3G50360.1 centrin2)

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 1 

Query: 8  LNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDGKV 67
          L   + + IK+ FE +D DG GT+  +E+  AM A+GF++  +     I+  D+D  G +
Sbjct: 20 LTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAI 79

Query: 68 DQDELEKLIDCVI 81
          D DE   ++   I
Sbjct: 80 DFDEFVHMMTAKI 92

[Close]
BLAST of Cucsa.232830 vs. TAIR10
Match: AT4G04700.1 (AT4G04700.1 calcium-dependent protein kinase 27)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1 

Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           +S +  +  L RDE + K F+ +D D DG +TK+E+  AM   G      + Q  I+ AD
Sbjct: 394 ISATMHRYKLDRDEHVYKAFQHFDKDNDGHITKEELEMAMKEDGAGDEGSIKQI-IADAD 453

Query: 61  RDDDGKVDQDELEKLI 77
            D+DGK++ +E   ++
Sbjct: 454 TDNDGKINFEEFRTMM 468

[Close]
BLAST of Cucsa.232830 vs. NCBI nr
Match: gi|700207403|gb|KGN62522.1| (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 101
           RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR
Sbjct: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 100

[Close]
BLAST of Cucsa.232830 vs. NCBI nr
Match: gi|700207395|gb|KGN62514.1| (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-19
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60

Query: 61 RDDDGKVD--QDELEKLIDCVIRFQT 85
          +D DGKVD  + E+E LID V+RFQT
Sbjct: 61 KDGDGKVDLGEAEMENLIDYVMRFQT 85

[Close]
BLAST of Cucsa.232830 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M+ SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MATSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFAD 60

Query: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 89
          +D DG VD +  E++ L+D V+RFQ  K V
Sbjct: 61 KDGDGAVDLEGGEIDSLVDYVMRFQASKDV 89

[Close]
BLAST of Cucsa.232830 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1 

Query: 6  SQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDG 65
          S+ N SR+EM K+IF E+D+DGDG L+  E+++AM  +G  I F    +G+++ D + DG
Sbjct: 7  SKFNFSREEM-KEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDG 66

Query: 66 KVDQDELEKLIDCVIRFQTRKR 88
           + +DEL+KLID   RFQ R+R
Sbjct: 67 LISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of Cucsa.232830 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-10
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1 

Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          MS + ++L LSR++ IK+IF E+D+DGDG L+  E+++A    G  + F    +G++ AD
Sbjct: 1  MSRAATRLQLSRED-IKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHAD 60

Query: 61 RDDDGKVDQDELEKLIDCVIRFQTRKRVC 90
           + DG ++++EL+KL+D   +FQ  KR C
Sbjct: 61 ENGDGFIEEEELDKLVDYAQKFQ-HKRKC 87

The following BLAST results are available for this feature:
BLAST of Cucsa.232830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP50_CUCSA8.6e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1[more]
A0A0A0LNG3_CUCSA3.2e-1960.47Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1[more]
A0A0A0LRC3_CUCSA2.1e-1855.56Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA2.2e-1246.34Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA4.6e-1040.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
BLAST of Cucsa.232830 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50360.14.7e-0632.88 centrin2[more]
AT4G04700.16.2e-0634.21 calcium-dependent protein kinase 27[more]
BLAST of Cucsa.232830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207403|gb|KGN62522.1|1.2e-48100.00hypothetical protein Csa_2G359910 [Cucumis sativus][more]
gi|700207395|gb|KGN62514.1|4.6e-1960.47hypothetical protein Csa_2G357860 [Cucumis sativus][more]
gi|700207402|gb|KGN62521.1|3.0e-1855.56hypothetical protein Csa_2G359900 [Cucumis sativus][more]
gi|700207406|gb|KGN62525.1|3.2e-1246.34hypothetical protein Csa_2G359940 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|6.7e-1040.45hypothetical protein Csa_2G358870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.232830.1Cucsa.232830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 16..42
score: 1.
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 58..75
score: 0
IPR002048EF-hand domainSMARTSM00054efh_1coord: 15..43
score: 9.2E-6coord: 51..79
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 11..46
score: 15.992coord: 60..82
score: 7
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 5..77
score: 6.3
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 9..79
score: 8.75
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 60..72
score: -coord: 24..36
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.232830Csa2G359900Cucumber (Chinese Long) v2cgycuB326
Cucsa.232830CSPI02G19230Wild cucumber (PI 183967)cgycpiB341
Cucsa.232830CmoCh12G004820Cucurbita moschata (Rifu)cgycmoB0641
Cucsa.232830Cp4.1LG11g01530Cucurbita pepo (Zucchini)cgycpeB0611
Cucsa.232830Cla97C08G159400Watermelon (97103) v2cgywmbB409
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.232830Melon (DHL92) v3.5.1cgymeB389
Cucsa.232830Melon (DHL92) v3.5.1cgymeB391
Cucsa.232830Watermelon (Charleston Gray)cgywcgB405
Cucsa.232830Watermelon (Charleston Gray)cgywcgB406
Cucsa.232830Watermelon (Charleston Gray)cgywcgB407
Cucsa.232830Watermelon (97103) v1cgywmB433
Cucsa.232830Watermelon (97103) v1cgywmB434
Cucsa.232830Watermelon (97103) v1cgywmB435
Cucsa.232830Cucurbita pepo (Zucchini)cgycpeB0612
Cucsa.232830Cucurbita pepo (Zucchini)cgycpeB0613
Cucsa.232830Cucurbita pepo (Zucchini)cgycpeB0614
Cucsa.232830Bottle gourd (USVL1VR-Ls)cgylsiB378
Cucsa.232830Bottle gourd (USVL1VR-Ls)cgylsiB379
Cucsa.232830Melon (DHL92) v3.6.1cgymedB387
Cucsa.232830Melon (DHL92) v3.6.1cgymedB389
Cucsa.232830Silver-seed gourdcarcgyB0222
Cucsa.232830Silver-seed gourdcarcgyB0874
Cucsa.232830Cucumber (Chinese Long) v3cgycucB347
Cucsa.232830Cucumber (Chinese Long) v3cgycucB349
Cucsa.232830Watermelon (97103) v2cgywmbB408
Cucsa.232830Wax gourdcgywgoB458
Cucsa.232830Wax gourdcgywgoB461
Cucsa.232830Cucurbita maxima (Rimu)cgycmaB0637
Cucsa.232830Cucurbita maxima (Rimu)cgycmaB0638
Cucsa.232830Cucurbita maxima (Rimu)cgycmaB0639
Cucsa.232830Cucurbita maxima (Rimu)cgycmaB0642
Cucsa.232830Cucurbita moschata (Rifu)cgycmoB0640
Cucsa.232830Cucurbita moschata (Rifu)cgycmoB0642
Cucsa.232830Cucurbita moschata (Rifu)cgycmoB0643
Cucsa.232830Wild cucumber (PI 183967)cgycpiB343
Cucsa.232830Cucumber (Chinese Long) v2cgycuB328