Cucsa.232830.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.232830.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01989 : 624026 .. 624709 (-)
Sequence length	684

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGACTCTTTACGCAAAGAAAAACTCTAAGAAGACAAAGAAATTATTATCATCAATTACCAACTCTATATAAAGACTTCTTCCACAAAGCAAAACTCTAAAGGCACAAACAAATTATTATCACAGACATCAGAGGTTGGCTTTTTGACAAAGTACCCCGCTCTCGATCGTATCATTCAATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGATGAATCGAGACCATGTAAATCTATTTTCAATTTATGTGTTTGTTTGTTTTCAATCAATAAATGGTTTATGCTACCATAATTGAGCGCGTTATGCTCAAATTTATGTGTTTGTTTGTTTGTTTTGTTATACTTTTGTTGTCTGTATGCAGAATATTGATGTCTCTCCCTCTCTAATTTATGAATATATATGTTTCAACTTTACA

mRNA sequence

TAGACTCTTTACGCAAAGAAAAACTCTAAGAAGACAAAGAAATTATTATCATCAATTACCAACTCTATATAAAGACTTCTTCCACAAAGCAAAACTCTAAAGGCACAAACAAATTATTATCACAGACATCAGAGGTTGGCTTTTTGACAAAGTACCCCGCTCTCGATCGTATCATTCAATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGATGAATCGAGACCATGTAAATCTATTTTCAATTTATGTGTTTGTTTGTTTTCAATCAATAAATGGTTTATGCTACCATAATTGAGCGCGTTATGCTCAAATTTATGTGTTTGTTTGTTTGTTTTGTTATACTTTTGTTGTCTGTATGCAGAATATTGATGTCTCTCCCTCTCTAATTTATGAATATATATGTTTCAACTTTACA

Coding sequence (CDS)

ATGTCGGTGTCTAGATCTCAATTGAATTTGTCGAGGGATGAGATGATTAAGAAGATTTTCGAAGAGTATGACGTGGACGGAGATGGAACCCTCACCAAGCAAGAAGTGATGCAAGCCATGGACGCCATGGGTTTTAAGATACTGTTCCAGATGACTCAATTTGGTATTTCTTTTGCTGACAGAGATGATGATGGTAAGGTTGATCAAGATGAGTTGGAGAAACTGATCGACTGTGTCATCAGGTTTCAAACCCGCAAGAGAGTCTGCAGGCGGCCGGTTAATTCGACAGAAAAAACAAGATGA

Protein sequence

MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR*

Homology

[Close]

BLAST of Cucsa.232830.1 vs. TrEMBL
Match: A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 101
           RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR
Sbjct: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 100

[Close]

BLAST of Cucsa.232830.1 vs. TrEMBL
Match: A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60

Query: 61 RDDDGKVD--QDELEKLIDCVIRFQT 85
          +D DGKVD  + E+E LID V+RFQT
Sbjct: 61 KDGDGKVDLGEAEMENLIDYVMRFQT 85

[Close]

BLAST of Cucsa.232830.1 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M+ SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MATSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFAD 60

Query: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 89
          +D DG VD +  E++ L+D V+RFQ  K V
Sbjct: 61 KDGDGAVDLEGGEIDSLVDYVMRFQASKDV 89

[Close]

BLAST of Cucsa.232830.1 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 6  SQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDG 65
          S+ N SR+EM K+IF E+D+DGDG L+  E+++AM  +G  I F    +G+++ D + DG
Sbjct: 7  SKFNFSREEM-KEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDG 66

Query: 66 KVDQDELEKLIDCVIRFQTRKR 88
           + +DEL+KLID   RFQ R+R
Sbjct: 67 LISEDELDKLIDYAERFQKRRR 87

[Close]

BLAST of Cucsa.232830.1 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          MS + ++L LSR++ IK+IF E+D+DGDG L+  E+++A    G  + F    +G++ AD
Sbjct: 1  MSRAATRLQLSRED-IKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHAD 60

Query: 61 RDDDGKVDQDELEKLIDCVIRFQTRKRVC 90
           + DG ++++EL+KL+D   +FQ  KR C
Sbjct: 61 ENGDGFIEEEELDKLVDYAQKFQ-HKRKC 87

[Close]

BLAST of Cucsa.232830.1 vs. TAIR10
Match: AT3G50360.1 (AT3G50360.1 centrin2)

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 1


Query: 8  LNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDGKV 67
          L   + + IK+ FE +D DG GT+  +E+  AM A+GF++  +     I+  D+D  G +
Sbjct: 20 LTTQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAI 79

Query: 68 DQDELEKLIDCVI 81
          D DE   ++   I
Sbjct: 80 DFDEFVHMMTAKI 92

[Close]

BLAST of Cucsa.232830.1 vs. TAIR10
Match: AT4G04700.1 (AT4G04700.1 calcium-dependent protein kinase 27)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           +S +  +  L RDE + K F+ +D D DG +TK+E+  AM   G      + Q  I+ AD
Sbjct: 394 ISATMHRYKLDRDEHVYKAFQHFDKDNDGHITKEELEMAMKEDGAGDEGSIKQI-IADAD 453

Query: 61  RDDDGKVDQDELEKLI 77
            D+DGK++ +E   ++
Sbjct: 454 TDNDGKINFEEFRTMM 468

[Close]

BLAST of Cucsa.232830.1 vs. NCBI nr
Match: gi|700207403|gb|KGN62522.1| (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
           MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD
Sbjct: 1   MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 101
           RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR
Sbjct: 61  RDDDGKVDQDELEKLIDCVIRFQTRKRVCRRPVNSTEKTR 100

[Close]

BLAST of Cucsa.232830.1 vs. NCBI nr
Match: gi|700207395|gb|KGN62514.1| (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-19
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG+LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHAD 60

Query: 61 RDDDGKVD--QDELEKLIDCVIRFQT 85
          +D DGKVD  + E+E LID V+RFQT
Sbjct: 61 KDGDGKVDLGEAEMENLIDYVMRFQT 85

[Close]

BLAST of Cucsa.232830.1 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-18
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          M+ SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MATSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFAD 60

Query: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 89
          +D DG VD +  E++ L+D V+RFQ  K V
Sbjct: 61 KDGDGAVDLEGGEIDSLVDYVMRFQASKDV 89

[Close]

BLAST of Cucsa.232830.1 vs. NCBI nr
Match: gi|700207406|gb|KGN62525.1| (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 6  SQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFADRDDDG 65
          S+ N SR+EM K+IF E+D+DGDG L+  E+++AM  +G  I F    +G+++ D + DG
Sbjct: 7  SKFNFSREEM-KEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDG 66

Query: 66 KVDQDELEKLIDCVIRFQTRKR 88
           + +DEL+KLID   RFQ R+R
Sbjct: 67 LISEDELDKLIDYAERFQKRRR 87

[Close]

BLAST of Cucsa.232830.1 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-10
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60
          MS + ++L LSR++ IK+IF E+D+DGDG L+  E+++A    G  + F    +G++ AD
Sbjct: 1  MSRAATRLQLSRED-IKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHAD 60

Query: 61 RDDDGKVDQDELEKLIDCVIRFQTRKRVC 90
           + DG ++++EL+KL+D   +FQ  KR C
Sbjct: 61 ENGDGFIEEEELDKLVDYAQKFQ-HKRKC 87

The following BLAST results are available for this feature:

BLAST of Cucsa.232830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP50_CUCSA	8.6e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1	[more]
A0A0A0LNG3_CUCSA	3.2e-19	60.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1	[more]
A0A0A0LRC3_CUCSA	2.1e-18	55.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	2.2e-12	46.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]
A0A0A0LRC1_CUCSA	4.6e-10	40.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1	[more]

BLAST of Cucsa.232830.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50360.1	4.7e-06	32.88	centrin2	[more]
AT4G04700.1	6.2e-06	34.21	calcium-dependent protein kinase 27	[more]

BLAST of Cucsa.232830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207403\|gb\|KGN62522.1\|	1.2e-48	100.00	hypothetical protein Csa_2G359910 [Cucumis sativus]	[more]
gi\|700207395\|gb\|KGN62514.1\|	4.6e-19	60.47	hypothetical protein Csa_2G357860 [Cucumis sativus]	[more]
gi\|700207402\|gb\|KGN62521.1\|	3.0e-18	55.56	hypothetical protein Csa_2G359900 [Cucumis sativus]	[more]
gi\|700207406\|gb\|KGN62525.1\|	3.2e-12	46.34	hypothetical protein Csa_2G359940 [Cucumis sativus]	[more]
gi\|700207397\|gb\|KGN62516.1\|	6.7e-10	40.45	hypothetical protein Csa_2G358870 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.232830	Cucsa.232830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.232830.1	Cucsa.232830.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232830.1.five_prime_UTR.1	Cucsa.232830.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232830.1.CDS.1	Cucsa.232830.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.232830.1.three_prime_UTR.1	Cucsa.232830.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 16..42 score: 1.
IPR002048	EF-hand domain	PFAM	PF13202	EF-hand_5	coord: 58..75 score: 0
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 15..43 score: 9.2E-6coord: 51..79 score:
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 11..46 score: 15.992coord: 60..82 score: 7
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 5..77 score: 6.3
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 9..79 score: 8.75
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 60..72 score: -coord: 24..36 scor