CSPI02G19230 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G19230
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Polcalcin Jun o 2
Location	Chr2 : 17532987 .. 17533286 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA

mRNA sequence

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA

Coding sequence (CDS)

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA

Homology

[Close]

BLAST of CSPI02G19230 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-44
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVAFADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPQDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVP+DASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]

BLAST of CSPI02G19230 vs. TrEMBL
Match: A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-33
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAPK 88
          DGDG VDL   E++ L+DYVMRFQ P+
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87

[Close]

BLAST of CSPI02G19230 vs. TrEMBL
Match: A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]

BLAST of CSPI02G19230 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

[Close]

BLAST of CSPI02G19230 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1


Query: 6  SQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADKDGDGA 65
          S+   +R+E++EI  EHD+DGDG L+  E+++A+  +G  + F KAHYG+A+ D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 VDLEGGEIDKLLDYVMRFQ 85
          +  +  E+DKL+DY  RFQ
Sbjct: 67 ISED--ELDKLIDYAERFQ 83

[Close]

BLAST of CSPI02G19230 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVAFADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPQDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVP+DASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]

BLAST of CSPI02G19230 vs. NCBI nr
Match: gi|700207395|gb|KGN62514.1| (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAPK 88
          DGDG VDL   E++ L+DYVMRFQ P+
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87

[Close]

BLAST of CSPI02G19230 vs. NCBI nr
Match: gi|700207403|gb|KGN62522.1| (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]

BLAST of CSPI02G19230 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 39/83 (46.99%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 2   AMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADKD 61
           A+  ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD++
Sbjct: 83  AIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADEN 142

Query: 62  GDGAVDLEGGEIDKLLDYVMRFQ 85
           GDG ++ E  E+DKL+DY  +FQ
Sbjct: 143 GDGFIEEE--ELDKLVDYAQKFQ 163

[Close]

BLAST of CSPI02G19230 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

The following BLAST results are available for this feature:

BLAST of CSPI02G19230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G19230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRC3_CUCSA	2.2e-44	93.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1	[more]
A0A0A0LNG3_CUCSA	6.6e-33	83.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1	[more]
A0A0A0LP50_CUCSA	1.6e-18	56.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1	[more]
A0A0A0LRC1_CUCSA	1.6e-15	46.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1	[more]
A0A0A0LKX1_CUCSA	7.6e-13	45.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1	[more]

BLAST of CSPI02G19230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G19230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207402\|gb\|KGN62521.1\|	3.1e-44	93.94	hypothetical protein Csa_2G359900 [Cucumis sativus]	[more]
gi\|700207395\|gb\|KGN62514.1\|	9.4e-33	83.91	hypothetical protein Csa_2G357860 [Cucumis sativus]	[more]
gi\|700207403\|gb\|KGN62522.1\|	2.3e-18	56.67	hypothetical protein Csa_2G359910 [Cucumis sativus]	[more]
gi\|449470198\|ref\|XP_004152805.1\|	2.3e-15	46.99	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
gi\|700207397\|gb\|KGN62516.1\|	2.3e-15	46.43	hypothetical protein Csa_2G358870 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G19230.1	CSPI02G19230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF00036	EF-hand_1	coord: 14..42 score: 2.
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 14..42 score: 3.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 10..45 score: 13
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 2..31 score: 4.2E-6coord: 32..69 score: 1.
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 11..69 score: 4.66
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 23..35 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G19230	Cucsa.232830	Cucumber (Gy14) v1	cgycpiB341

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G19230	Melon (DHL92) v3.6.1	cpimedB100
CSPI02G19230	Melon (DHL92) v3.6.1	cpimedB114
CSPI02G19230	Melon (DHL92) v3.6.1	cpimedB142
CSPI02G19230	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G19230	Cucumber (Gy14) v2	cgybcpiB163
CSPI02G19230	Cucumber (Gy14) v2	cgybcpiB305
CSPI02G19230	Silver-seed gourd	carcpiB0209
CSPI02G19230	Silver-seed gourd	carcpiB0806
CSPI02G19230	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G19230	Cucumber (Chinese Long) v3	cpicucB103
CSPI02G19230	Watermelon (97103) v2	cpiwmbB137
CSPI02G19230	Watermelon (97103) v2	cpiwmbB166
CSPI02G19230	Wax gourd	cpiwgoB159
CSPI02G19230	Wax gourd	cpiwgoB198
CSPI02G19230	Wild cucumber (PI 183967)	cpicpiB074
CSPI02G19230	Wild cucumber (PI 183967)	cpicpiB091
CSPI02G19230	Cucumber (Gy14) v1	cgycpiB331
CSPI02G19230	Cucurbita maxima (Rimu)	cmacpiB011
CSPI02G19230	Cucurbita maxima (Rimu)	cmacpiB175
CSPI02G19230	Cucurbita maxima (Rimu)	cmacpiB439
CSPI02G19230	Cucurbita maxima (Rimu)	cmacpiB513
CSPI02G19230	Cucurbita maxima (Rimu)	cmacpiB793
CSPI02G19230	Cucurbita moschata (Rifu)	cmocpiB002
CSPI02G19230	Cucurbita moschata (Rifu)	cmocpiB160
CSPI02G19230	Cucurbita moschata (Rifu)	cmocpiB428
CSPI02G19230	Cucurbita moschata (Rifu)	cmocpiB782
CSPI02G19230	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G19230	Cucumber (Chinese Long) v2	cpicuB080
CSPI02G19230	Cucumber (Chinese Long) v2	cpicuB096
CSPI02G19230	Melon (DHL92) v3.5.1	cpimeB105
CSPI02G19230	Melon (DHL92) v3.5.1	cpimeB118
CSPI02G19230	Melon (DHL92) v3.5.1	cpimeB148
CSPI02G19230	Watermelon (Charleston Gray)	cpiwcgB136
CSPI02G19230	Watermelon (Charleston Gray)	cpiwcgB144
CSPI02G19230	Watermelon (Charleston Gray)	cpiwcgB172
CSPI02G19230	Watermelon (97103) v1	cpiwmB116
CSPI02G19230	Watermelon (97103) v1	cpiwmB129
CSPI02G19230	Watermelon (97103) v1	cpiwmB153
CSPI02G19230	Cucurbita pepo (Zucchini)	cpecpiB092
CSPI02G19230	Cucurbita pepo (Zucchini)	cpecpiB541
CSPI02G19230	Cucurbita pepo (Zucchini)	cpecpiB773
CSPI02G19230	Cucurbita pepo (Zucchini)	cpecpiB820
CSPI02G19230	Bottle gourd (USVL1VR-Ls)	cpilsiB114
CSPI02G19230	Bottle gourd (USVL1VR-Ls)	cpilsiB141