CSPI02G19230.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G19230.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPolcalcin Jun o 2
LocationChr2 : 17532987 .. 17533286 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA

mRNA sequence

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA

Coding sequence (CDS)

ATGGCAATGTCGAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGGGAGATCTTAGAAGAACATGATGTGGACGGTGATGGTCGCCTGACTAAGCAAGAGGTGATGCAAGCCCTGAACTCCATGGGTGCTATGATGTCGTTTCAGAAAGCTCACTATGGTGTTGCTTTTGCTGACAAAGATGGAGATGGTGCAGTCGATCTAGAAGGTGGTGAGATTGATAAGCTTCTTGACTATGTCATGAGGTTTCAGGCCCCAAAGGACGTCCCTCAAGATGCCAGCCCAGAAGCCTTGCCATGA
Homology
[Close]
BLAST of CSPI02G19230.1 vs. TrEMBL
Match: A0A0A0LRC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-44
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVAFADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPQDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVP+DASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CSPI02G19230.1 vs. TrEMBL
Match: A0A0A0LNG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-33
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAPK 88
          DGDG VDL   E++ L+DYVMRFQ P+
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87

[Close]
BLAST of CSPI02G19230.1 vs. TrEMBL
Match: A0A0A0LP50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]
BLAST of CSPI02G19230.1 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

[Close]
BLAST of CSPI02G19230.1 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 36/79 (45.57%), Postives = 57/79 (72.15%), Query Frame = 1 

Query: 6  SQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADKDGDGA 65
          S+   +R+E++EI  EHD+DGDG L+  E+++A+  +G  + F KAHYG+A+ D++GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 VDLEGGEIDKLLDYVMRFQ 85
          +  +  E+DKL+DY  RFQ
Sbjct: 67 ISED--ELDKLIDYAERFQ 83

[Close]
BLAST of CSPI02G19230.1 vs. NCBI nr
Match: gi|700207402|gb|KGN62521.1| (hypothetical protein Csa_2G359900 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
           MA SRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMG MMSFQKAHYGVAFADK
Sbjct: 1   MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61  DGDGAVDLEGGEIDKLLDYVMRFQAPKDVPQDASPEALP 100
           DGDGAVDLEGGEID L+DYVMRFQA KDVP+DASPEALP
Sbjct: 61  DGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDASPEALP 99

[Close]
BLAST of CSPI02G19230.1 vs. NCBI nr
Match: gi|700207395|gb|KGN62514.1| (hypothetical protein Csa_2G357860 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          MAMSRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG+MMSFQKAHYGV+ ADK
Sbjct: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQAPK 88
          DGDG VDL   E++ L+DYVMRFQ P+
Sbjct: 61 DGDGKVDLGEAEMENLIDYVMRFQTPR 87

[Close]
BLAST of CSPI02G19230.1 vs. NCBI nr
Match: gi|700207403|gb|KGN62522.1| (hypothetical protein Csa_2G359910 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G++FAD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGAVDLEGGEIDKLLDYVMRFQAPKDV 90
          +D DG VD +  E++KL+D V+RFQ  K V
Sbjct: 61 RDDDGKVDQD--ELEKLIDCVIRFQTRKRV 88

[Close]
BLAST of CSPI02G19230.1 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 39/83 (46.99%), Postives = 64/83 (77.11%), Query Frame = 1 

Query: 2   AMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADKD 61
           A+  ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD++
Sbjct: 83  AIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADEN 142

Query: 62  GDGAVDLEGGEIDKLLDYVMRFQ 85
           GDG ++ E  E+DKL+DY  +FQ
Sbjct: 143 GDGFIEEE--ELDKLVDYAQKFQ 163

[Close]
BLAST of CSPI02G19230.1 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 39/84 (46.43%), Postives = 65/84 (77.38%), Query Frame = 1 

Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGAMMSFQKAHYGVAFADK 60
          M+ + ++L+L+R++++EI  EHD+DGDGRL+  E+++A    G+++ F KAHYG+A AD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGAVDLEGGEIDKLLDYVMRFQ 85
          +GDG ++ E  E+DKL+DY  +FQ
Sbjct: 61 NGDGFIEEE--ELDKLVDYAQKFQ 82

The following BLAST results are available for this feature:
BLAST of CSPI02G19230.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19230.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRC3_CUCSA2.2e-4493.94Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359900 PE=4 SV=1[more]
A0A0A0LNG3_CUCSA6.6e-3383.91Uncharacterized protein OS=Cucumis sativus GN=Csa_2G357860 PE=4 SV=1[more]
A0A0A0LP50_CUCSA1.6e-1856.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359910 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA1.6e-1546.43Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA7.6e-1345.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
BLAST of CSPI02G19230.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207402|gb|KGN62521.1|3.1e-4493.94hypothetical protein Csa_2G359900 [Cucumis sativus][more]
gi|700207395|gb|KGN62514.1|9.4e-3383.91hypothetical protein Csa_2G357860 [Cucumis sativus][more]
gi|700207403|gb|KGN62522.1|2.3e-1856.67hypothetical protein Csa_2G359910 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|2.3e-1546.99PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|2.3e-1546.43hypothetical protein Csa_2G358870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G19230CSPI02G19230gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G19230.1CSPI02G19230.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19230.1.cds1CSPI02G19230.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 14..42
score: 2.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 14..42
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 10..45
score: 13
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 2..31
score: 4.2E-6coord: 32..69
score: 1.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 11..69
score: 4.66
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
scor