Cucsa.170750 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.170750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L35
Location	scaffold01179 : 81430 .. 83893 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCCCTCCACCACTCTCTCTTCTCTATATTTTTGTATGGTTAAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTCTTCTAGATAGTTTGAACATATTTTGTTGTTTATTTCAAACGAATTTGTATTATAATACGAGAATGGCATGTTGAATTTTAAACCCTTTAAATCACCCAATTCTAGACGCTTACTGAATGAGCTAATAGCATTATGAATTGTTGAACAATACGCCTCTGTCTTCTCTGTTTTTACTGGGATTTTCCCTGTTCATTTTGATTTTATTGTTTTGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTAATGTTCATGATTCTTTATTTGTTATGCTGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAAGATTTATATAAATGGTCATAACTTAGCCAATGTAGCCACTACTTTCAATCCCTATGATTCTTCTCTAAGTTATCTACCAATTTCCCTCTCTTAAATGCAAGTTATCAAAGTAGTTATGTGAAGAATCTTACCGAAGTTGGAATGTACTTCCTCATTTGATTCAATCCCGATCATATTGTCAGCTAATAACGTGCATTCCAACTCAATTAACTTTGTATTGGAAGTATGATCTAATTTGAAGTTATTCATCGGTTGTCATGGTCTGTTCAGACAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAGATTTCACAAAGATCATTTAGGAAACAAGTTTTGTTTCGTTTTGTGCCCAAGACCTTGTCCAGGAACCCCAAGCACAAGAAAATATAGCTTCGAGCATACCTTTAGTTTTGGATCTTCAAAATTTTTTACACTAGCTATAGTGTTGATTGGTTTTTTATTGGTTGCTTCCGACTCCGAAATGGATAACCAATTGAGGGGGGGATATAAAGGGTACAATCTTCTTCCAACCTTGAACATTTTGAAGGGAGAGGTTCAAGAGACAAGATGACTTTTTGCCTATCACTTTCTCAGTTGATTTCTTGTAGTTGGAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTCAAATCTGATTCCATCTTGATTGTTTCTGTCTGGTTTAGTCTGCTGATTTTCCCTGAGCATATAGACGTTTTGCGTTTTTATCATGTAGCATATGGTTAGTGAACTCTTAGATCAACAAAATACTTCACCTAGGAATTCCTTTTATCAACAATATTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATACACAATGAACTGACCGTCCTATTCAGCCTCATCAATTGCCGAAACAAAATGAAGGTAAGAAGGTAAGAAATCCAACAAGGAAAATGATTTTGGTCACTTGTTTTGTTGAATGATGACCCCTGGAAAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATAAATATAGTAACGAAGAATTGTCAAAAATAGCAAATTTGATAAACTATTTATAACATATAGCAAAAATTTTAAATTCTATCAATAATAAACCTTGTGATAGAAGTCTTGTTAGTTTTTATCATTGGTAGAATTTAAAATTTTGCTATAACTTGTAAATA

mRNA sequence

ACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATAAATATAGTaacgaagaattgtcaaaaatagcaaatttgataaactatttataacatatagcaaaaattttaaattctatcaataataaaccttgtgatagaagtcttgttagtttttatcattggtagaatttaaaattttgctataacttgtaaata

Coding sequence (CDS)

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG

Protein sequence

MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ*

Homology

[Close]

BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-36
Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MAS SMA S  + F       S +VS  S    SV+   SL  SSSH+ISG       K 
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRS----SVHFATSL--SSSHSISGLRAVLPLKI 60

Query: 61  SHI-SPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           S + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]

BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-34
Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 1   MASASMAVSF---GLRFSPLCSRPSFRVSHTS-VGIASVNKV--NSLKLSSSHNISGFGF 60
           MASA+  +SF    L  SP    PS R S    + +   NK   ++L LSSS +IS    
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  NSL----QKPSHISPTSQIRTP-FTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
             +    ++ S +  +    +P FTVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ 150
           HLL KKN KR+ RLSK+  V RSDYDNVIGALPYLKVNR+
Sbjct: 123 HLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158

[Close]

BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_SYNE7 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]

BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_SYNP6 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   L
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQPEVVHETDQERVKLML 62

Query: 142 PY 144
           PY
Sbjct: 63  PY 64

[Close]

BLAST of Cucsa.170750 vs. Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGAL 141
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K   ++ + SKM  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 142 PYL 145
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Cucsa.170750 vs. TrEMBL
Match: A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.7e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Cucsa.170750 vs. TrEMBL
Match: W9SHK1_9ROSA (50S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+MAVSFG  +SP C R +  +S  SV +A  +K  SLKLSSSH IS F     ++ 
Sbjct: 1   MASATMAVSFGFSYSPFCPRRT-PLSRGSVRLAPFHKAASLKLSSSHCISAFSSVLPRRL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
             +SP+       T+F+AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  CSVSPSPCSPRSLTIFSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNNKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]

BLAST of Cucsa.170750 vs. TrEMBL
Match: B9IMA0_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.8e-43
Identity = 105/151 (69.54%), Postives = 119/151 (78.81%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNS-LKLSSSHNISGFGFNSLQK 60
           MAS ++ +SF L+  PL S P+ RVS+ S  +A + KVNS L+LSS  NISG G  S  K
Sbjct: 1   MASLTV-LSFNLKSCPLHSFPT-RVSYGSAQLAPLIKVNSSLRLSSCRNISGSGSLSPLK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           P  I+  +Q     TVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR
Sbjct: 61  PCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]

BLAST of Cucsa.170750 vs. TrEMBL
Match: A5BPA4_VITVI (50S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.2e-43
Identity = 104/158 (65.82%), Postives = 117/158 (74.05%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPS-FRVSHTSVGIASVNKVNSLKLSSSHNISGFG------ 60
           MASA++ +SF LR     S PS  RV +  V  +  ++  SLKLSSS NISGF       
Sbjct: 1   MASATLMLSFSLRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLR 60

Query: 61  FNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLC 120
            ++L  PS   P+S      TV +AKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL 
Sbjct: 61  HSTLNSPSPSQPSS-----LTVVSAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLA 120

Query: 121 KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNR+A+
Sbjct: 121 KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNREAK 153

[Close]

BLAST of Cucsa.170750 vs. TrEMBL
Match: A9PBS9_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNS-LKLSSSHNISGFGFNSLQK 60
           MAS ++ +SF L+  PL S  S RVS+ S  +A +NKVNS L+LSS  NISG    S  K
Sbjct: 1   MASLTV-LSFNLKSCPLHSF-STRVSYGSAQLAPLNKVNSSLRLSSCRNISGSRSLSPLK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           P  I+  +Q     TVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR
Sbjct: 61  PCSITSLTQRFQSLTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]

BLAST of Cucsa.170750 vs. TAIR10
Match: AT2G24090.1 (AT2G24090.1 Ribosomal protein L35)

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-37
Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MAS SMA S  + F       S +VS  S    SV+   SL  SSSH+ISG       K 
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRS----SVHFATSL--SSSHSISGLRAVLPLKI 60

Query: 61  SHI-SPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
           S + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KR
Sbjct: 61  STVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKR 120

Query: 121 RLRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           +LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Sbjct: 121 KLRLSKMTEVNRSDYDNVIGALPYLKVNRKA 144

[Close]

BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|449457865|ref|XP_004146668.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 3.9e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|659086249|ref|XP_008443834.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 9.8e-74
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Sbjct: 121 LRLSKLHPVSRSDYDNVIGALPYLKVNRQAQ 151

[Close]

BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|703155119|ref|XP_010111119.1| (50S ribosomal protein L35 [Morus notabilis])

HSP 1 Score: 188.7 bits (478), Expect = 7.3e-45
Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+MAVSFG  +SP C R +  +S  SV +A  +K  SLKLSSSH IS F     ++ 
Sbjct: 1   MASATMAVSFGFSYSPFCPRRT-PLSRGSVRLAPFHKAASLKLSSSHCISAFSSVLPRRL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
             +SP+       T+F+AKGYK KTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR+
Sbjct: 61  CSVSPSPCSPRSLTIFSAKGYKRKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNNKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQA 151
           LRLSKMHPVSRSDYDNVIGALPYLKVNR+A
Sbjct: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRKA 149

[Close]

BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|1009109751|ref|XP_015891890.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 101/151 (66.89%), Postives = 118/151 (78.15%), Query Frame = 1


Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASA+M VSFGLR+SP C     R+S  S+ +A  NK +SL+LSSS +ISGF   SL+  
Sbjct: 1   MASATMTVSFGLRYSPFCPSSPTRLSRASLQLAPFNKQSSLRLSSSQSISGFP--SLKLS 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           +   P   +R+  TV +AKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQHLL KKN KR+
Sbjct: 61  TMTPPPPGLRS-LTVVSAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRK 120

Query: 121 LRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           LRLSK+HPV RSDYDNVI ALPYLKVNR A+
Sbjct: 121 LRLSKLHPVDRSDYDNVIKALPYLKVNRNAK 148

[Close]

BLAST of Cucsa.170750 vs. NCBI nr
Match: gi|470148804|ref|XP_004309940.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 186.4 bits (472), Expect = 3.6e-44
Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 1


Query: 2   ASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPS 61
           A+ +M VSFGLR+SPLCS    RV   SV +A +N+ NSL+LSSSH ISGF      +  
Sbjct: 4   ATVTMTVSFGLRYSPLCS---CRVGQASVQLAQLNRPNSLRLSSSHTISGFRSLLPLRLC 63

Query: 62  HISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRL 121
            I+ T      FT+ A KGYKMKTHKAS+KRFRVTGRGKIVRRRA KQHLL KKNAKRR 
Sbjct: 64  TITSTPLRLRSFTIVAHKGYKMKTHKASSKRFRVTGRGKIVRRRARKQHLLVKKNAKRRN 123

Query: 122 RLSKMHPVSRSDYDNVIGALPYLKVNRQAQ 152
           RLSKMH VSRSDYDNVIGALPYLKVNR+A+
Sbjct: 124 RLSKMHAVSRSDYDNVIGALPYLKVNRKAE 150

The following BLAST results are available for this feature:

BLAST of Cucsa.170750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK35_ARATH	3.6e-36	64.90	50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 S...	[more]
RK35_SPIOL	9.9e-34	56.88	50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1	[more]
RL35_SYNE7	2.0e-10	54.84	50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI P...	[more]
RL35_SYNP6	2.0e-10	54.84	50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]
RL35_NOSS1	2.6e-10	55.56	50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE...	[more]

BLAST of Cucsa.170750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYX0_CUCSA	2.7e-78	100.00	50S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1	[more]
W9SHK1_9ROSA	5.1e-45	68.00	50S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1	[more]
B9IMA0_POPTR	2.8e-43	69.54	50S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2	[more]
A5BPA4_VITVI	6.2e-43	65.82	50S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1	[more]
A9PBS9_POPTR	1.1e-42	69.54	50S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of Cucsa.170750 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24090.1	2.1e-37	64.90	Ribosomal protein L35	[more]

BLAST of Cucsa.170750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457865\|ref\|XP_004146668.1\|	3.9e-78	100.00	PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus]	[more]
gi\|659086249\|ref\|XP_008443834.1\|	9.8e-74	95.36	PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]	[more]
gi\|703155119\|ref\|XP_010111119.1\|	7.3e-45	68.00	50S ribosomal protein L35 [Morus notabilis]	[more]
gi\|1009109751\|ref\|XP_015891890.1\|	1.3e-44	66.89	PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba]	[more]
gi\|470148804\|ref\|XP_004309940.1\|	3.6e-44	68.00	PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001706	Ribosomal_L35_non-mt
IPR018265	Ribosomal_L35_CS
IPR021137	Ribosomal_L35

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.170750.1	Cucsa.170750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001706	Ribosomal protein L35, non-mitochondrial	PRINTS	PR00064	RIBOSOMALL35	coord: 100..114 score: 2.0E-17coord: 82..99 score: 2.0E-17coord: 115..133 score: 2.0
IPR001706	Ribosomal protein L35, non-mitochondrial	HAMAP	MF_00514	Ribosomal_L35	coord: 80..143 score: 15
IPR001706	Ribosomal protein L35, non-mitochondrial	TIGRFAMs	TIGR00001	TIGR00001	coord: 81..143 score: 3.2
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 84..110 scor
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 81..137 score: 2.8
None	No IPR available	PANTHER	PTHR33343	FAMILY NOT NAMED	coord: 32..151 score: 3.5
None	No IPR available	PANTHER	PTHR33343:SF1	50S RIBOSOMAL PROTEIN L35	coord: 32..151 score: 3.5
None	No IPR available	unknown	SSF143034	L35p-like	coord: 81..143 score: 2.49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.170750	Cla018755	Watermelon (97103) v1	cgywmB326
Cucsa.170750	Csa1G257920	Cucumber (Chinese Long) v2	cgycuB260
Cucsa.170750	MELO3C010199	Melon (DHL92) v3.5.1	cgymeB304
Cucsa.170750	ClCG06G012650	Watermelon (Charleston Gray)	cgywcgB305
Cucsa.170750	CSPI01G17980	Wild cucumber (PI 183967)	cgycpiB268
Cucsa.170750	CmaCh10G004470	Cucurbita maxima (Rimu)	cgycmaB0483
Cucsa.170750	CmaCh11G004410	Cucurbita maxima (Rimu)	cgycmaB0484
Cucsa.170750	CmoCh10G004810	Cucurbita moschata (Rifu)	cgycmoB0486
Cucsa.170750	CmoCh11G004410	Cucurbita moschata (Rifu)	cgycmoB0487
Cucsa.170750	Cp4.1LG18g05810	Cucurbita pepo (Zucchini)	cgycpeB0470
Cucsa.170750	MELO3C010199.2	Melon (DHL92) v3.6.1	cgymedB296
Cucsa.170750	CsaV3_1G029200	Cucumber (Chinese Long) v3	cgycucB273
Cucsa.170750	Cla97C06G121870	Watermelon (97103) v2	cgywmbB309
Cucsa.170750	Bhi02G000659	Wax gourd	cgywgoB351
Cucsa.170750	Carg14072	Silver-seed gourd	carcgyB0581
Cucsa.170750	Carg10014	Silver-seed gourd	carcgyB0156

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.170750	Cucurbita pepo (Zucchini)	cgycpeB0471
Cucsa.170750	Bottle gourd (USVL1VR-Ls)	cgylsiB284