Cucsa.049930 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTCCGCCACTATTACCGCCACCGCCGCCGCCGAACGCCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTTTCCCCTTCTTCTTCATCATCGTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTCTTGTTTGCCCCCACTGCCTCACTGACTTCATCGAACACATGGATTTCACCATACCCACTTCCTCTTCTTCCATTTCCGACAACCCCAATTCCTCTTCTCCCCCCACAGATTCCGATCCATCATCCTTCGTCTTTGTCGACCCACTTCCGATCACTTCCGATGACAATTACCTCCTTAATAGCCCTCAGTTCCTCCGTCTTTTCCAGCACCTTGCAGATTCATCCGAGTCTGATTTCGTCCCATCTGTCCCTTTCAACCCATTTACTCCGATCAAGGCCTCTGTCATGGCGATTCCCACTATTAAAGTCACCTCCGCCTTGCTCGATGAAGACCCAGTTTTAATTTGTGCTATCTGTAAGGATCAGTTCCTTCTTGAGGTTGAAGCCAAACAGCTCCCTTGTTCTCATCTTTATCATCCAGATTGCATTCTTCCTTGGCTTTCTAATCATGATTCTTGTCCGCTTTGCCGTTTTAAGCTTCCTTCTGATGACCCCTCGGATCGTGTGAGATGTAGGACTAGTGCCTTGTTGAGGGCTAGAGATCTGATGCATCAAGAAGATAGTTATGGGTTGAGGACTACTTTGGAACTCATGGCTAGAAGGCATAGTTCTATTTCTAGTGAGGGAATTCATGTGGATTCGTTTCAATCACCCACTCAGTTTGGGGTTGCTATGATGGAGAGTGGGGAACAGACCGACAGTGTTGAAACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAATGGTGATGAAAATGGGTTTTTGGGAATGGATGGACCTATAACTGAGGATGCTGGGACTGTAGTTCAGGATATTGGAGTTTCTCCTTCGAGTTTTGTTTCTGCATAAATTGAGGTTTGTGTTCTCCTCTCTTTTGACTTTTGTTTTtATTAGTTTTCCATGTTCTTGTAGTTTGTGTTGAGAAGATGGATTTCTACACCGAGCTTGGAAATGATAAATGAAGGAGTTTATATTTGATCTAAATTGACAAGTAATAACAAATAGAGTGCCAATGACTGAGTTGAGTTCTTAGAGCTTAGGAACTCATTGATTGGGCAGTTTTGATAGTCTTTTCAGGATTTATGATGGTTGTGTTTTTtACTTGAAACATCCATCTAGAGCATACCGCTCTTAGATAAAGATGGAAGCTTGATCCAAGCTTTCTGCTTTTATTtCCTACTGATGGCTCTTCGAATGGTTCTGTGGTGATAATGCAAAAAGACTAAAAaTGAATTCAACAGGGCCTGTTATAAACATTTCAAGAATTCTTAGAAATCTAGTTTAAAACTCCCATAGAAAAGACCATTGAACTTTAACTTTGTATAACCTTCCTGGTTTTGAACTATAAACCATACGTCCATACCATTACCAATGGTTGGTGCATGTATACGACTATCATCTCATCGCAAACTTGGTTTCCCATGCTTTTGCTGCCTTCTTTCTATTTGATGATCGTTGGCTTATGTGCACTATCGTAAGATGGTTCTGGCCTATCTTTAAACTTTAAGTAACCTGCAAGAATCATGAAGCTGAGCGAAAGTCTTGAAATTGGTTCGGCATTTTGTTTTGGAATTTGCATGTATGAAGTATCGACTGATGTAAAAGGTCTTAGGAAAGTTGGTTCATTATCGTTGGTATGAGACCATAATGTTATAGGTTTTGTAGATTGACTTATATTGTAAGTCCATAATGTCCCTATAGTCCATTAACAAATCCCATTTTCATCGCCAGATATGTTCTCCCAGTAAATGTTTACAATATTTAATGCATGAGATTTTGTTTGACTTAATGGCTCAGTAGGTCATGTTTCGTTGGACTGGGAAAATAATAAAAGCTAGTTACGTATGGTTCTTAGGATACGGCACCACGCAGAAGAGGAAGGGTTAGACGAGGTTGGCTTATTAGAGGAAAAGTTTAAGTTGCAGGACCCTCTAGTGCTGTAAGATCCTCCACTGCCACAAGACCCTCTCATGTCATAAATGCAAGGGAACGTTGCAGGAGGTCAAACTTAGGATGCGCCAGTGGCTTCATAGTAGCAAGCCCCATCCAACATCGAAAGTGATTTTGTTGCATTGGCAGCACAAGTAGAGGCAATCGTTACAACTATGATGGTGAGAATGCACAGTAGATGGTTGGAACAGCTGTGGCTGATCAGGTAGCCAGCAGATTCAAGTCTAGGTTTAGGACCAACAAGATTGATCGCTTGAAGCCAAGTACTTGCGGGACTTTAGGAAGTATAATCCTCACACATTTGATGGATCATCAAAGGACCCCATGAAGGCAGAATTTTGCTTGTCCTTAATTGAGACTATTTTTCGTTTTCTAAAGTGCCCTGATGATAGAAGCTTTAGTGTTCAGTATTTGTGCTTACAAACAGTGATGAGATCTGGTGGCAGTTCGCAGAAAGATGAATTGATACCAAAGCAGGACCTATGACTTGAGAACGATTTAAGGAATGTTTTTATGAGCAGTATTTCTCCGCCAATACAAGGTATGATAAGCAGGCTGAAGAAGAGGATAAGCTTGGCTGCCATATCATAGCAACCATATGCAACTGGCTTCTATTAGATTCTCAGTCAAGTAAAACATGACCTAGTAAGACATTAAGTTTTGCAAAATCTAATTCATTAAATACTATAAACATTTACTAGGAAGACATACCTGGCGATGACAAGGAATATGTTAATGGGCCGTAAGGACACTCACGACTCTAGGCTTACAATGCAAGTTAGTCTACAGAACTTATAATCTTATGCTCTTGTACCACCCTAATGATTCGTCTTTCCTAAAACTTTAACATGAGTCATTACTTCATGCCTGCAAATTTCCAACGCTTAGACCAATTGAAAGGAAGATGGGAGTTCTTTCTAGCATTGCACAATTTCTTTCATGTTTTTATGCAACTTCCGAGTCCTTGTGAACTGCAAAAGTGAGATTTATGCTTCTGTGTTCTCTAAAACAACCTTGAATAGGACAAAGCTTATATGAACACGATCTGTTATGGCCTTGAGTTCTAAAAAGGCACCTTAAACATGAAGAAACCCCATCACCCAACTTATTTGTGATGTGCTGTATACATATTTTACTAAGTTGTATCATATGCTAGCAATGCTTAATGATTTTACTTGTATTGGAGGAATCTTAATGTTTACATGTTTCCTTAAAGCAAGGATTCATCTAGTTAATATTAACTTACTTTTACTGTCATTTATTTTGTTAATGCAGGTAATATAGTAGAATATATGGTTGTTAGATGAATCTTAGAAAGCAGCTACCCCAAGTAGATGATTGATTGGAAGTGTAAATTGCTACAGAGAAAGACTCTGCTATCTTCTTCTTATTCTTCTCCTTCTTCATCTTCGGTAACCATGTCT ATGTCCTCCGCCACTATTACCGCCACCGCCGCCGCCGAACGCCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTttccccttcttcttcatcatcgtcttcttcttcttcttcttcctcttcctctCTTGTTTGCCCCCACTGCCTCACTGACTTCATCGAACACATGGATTTCACCATACCCACTTCCTCTTCTTCCATTTCCGACAACCCCAATTCCTCTTCTCCCCCCACAGATTCCGATCCATCATCCTTCGTCTTTGTCGACCCACTTCCGATCACTTCCGATGACAATTACCTCCTTAATAGCCCTCAGTTCCTCCGTCTTTTCCAGCACCTTGCAGATTCATCCGAGTCTGATTTCGTCCCATCTGTCCCTTTCAACCCATTTACTCCGATCAAGGCCTCTGTCATGGCGATTCCCACTATTAAAGTCACCTCCGCCTTGCTCGATGAAGACCCAGTTTTAATTTGTGCTATCTGTAAGGATCAGTTCCTTCTTGAGGTTGAAGCCAAACAGCTCCCTTGTTCTCATCTTTATCATCCAGATTGCATTCTTCCTTGGCTTTCTAATCATGATTCTTGTCCGCTTTGCCGTTTTAAGCTTCCTTCTGATGACCCCTCGGATCGTGTGAGATGTAGGACTAGTGCCTTGTTGAGGGCTAGAGATCTGATGCATCAAGAAGATAGTTATGGGTTGAGGACTACTTTGGAACTCATGGCTAGAAGGCATAGTTCTATTTCTAGTGAGGGAATTCATGTGGATTCGTTTCAATCACCCACTCAGTTTGGGGTTGCTATGATGGAGAGTGGGGAACAGACCGACAGTGTTGAAACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAATGGTGATGAAAATGGGTTTTTGGGAATGGATGGACCTATAACTGAGGATGCTGGGACTGTAGTTCAGGATATTGGAGTTTCTCCTTCGAGTTTTGTTTCTGCATAAATTGAGGTAATATAGTAGAATATATGGTTGTTAGATGAATCTTAGAAAGCAGCTACCCCAAGTAGATGATTGATTGGAAGTGTAAATTGCTACAGAGAAAGACTCTGCTAtcttcttcttattcttctccttcttcatcttcGGTAACCATGTCT ATGTCCTCCGCCACTATTACCGCCACCGCCGCCGCCGAACGCCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTTTCCCCTTCTTCTTCATCATCGTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTCTTGTTTGCCCCCACTGCCTCACTGACTTCATCGAACACATGGATTTCACCATACCCACTTCCTCTTCTTCCATTTCCGACAACCCCAATTCCTCTTCTCCCCCCACAGATTCCGATCCATCATCCTTCGTCTTTGTCGACCCACTTCCGATCACTTCCGATGACAATTACCTCCTTAATAGCCCTCAGTTCCTCCGTCTTTTCCAGCACCTTGCAGATTCATCCGAGTCTGATTTCGTCCCATCTGTCCCTTTCAACCCATTTACTCCGATCAAGGCCTCTGTCATGGCGATTCCCACTATTAAAGTCACCTCCGCCTTGCTCGATGAAGACCCAGTTTTAATTTGTGCTATCTGTAAGGATCAGTTCCTTCTTGAGGTTGAAGCCAAACAGCTCCCTTGTTCTCATCTTTATCATCCAGATTGCATTCTTCCTTGGCTTTCTAATCATGATTCTTGTCCGCTTTGCCGTTTTAAGCTTCCTTCTGATGACCCCTCGGATCGTGTGAGATGTAGGACTAGTGCCTTGTTGAGGGCTAGAGATCTGATGCATCAAGAAGATAGTTATGGGTTGAGGACTACTTTGGAACTCATGGCTAGAAGGCATAGTTCTATTTCTAGTGAGGGAATTCATGTGGATTCGTTTCAATCACCCACTCAGTTTGGGGTTGCTATGATGGAGAGTGGGGAACAGACCGACAGTGTTGAAACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAATGGTGATGAAAATGGGTTTTTGGGAATGGATGGACCTATAACTGAGGATGCTGGGACTGTAGTTCAGGATATTGGAGTTTCTCCTTCGAGTTTTGTTTCTGCATAA MSSATITATAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSLVCPHCLTDFIEHMDFTIPTSSSSISDNPNSSSPPTDSDPSSFVFVDPLPITSDDNYLLNSPQFLRLFQHLADSSESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRFKLPSDDPSDRVRCRTSALLRARDLMHQEDSYGLRTTLELMARRHSSISSEGIHVDSFQSPTQFGVAMMESGEQTDSVETVSSVATDDGIVIVNSNGDENGFLGMDGPITEDAGTVVQDIGVSPSSFVSA*
BLAST of Cucsa.049930 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18 Identity = 67/215 (31.16%), Postives = 112/215 (52.09%), Query Frame = 1
BLAST of Cucsa.049930 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.4e-18 Identity = 69/200 (34.50%), Postives = 103/200 (51.50%), Query Frame = 1
BLAST of Cucsa.049930 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 7.5e-18 Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
BLAST of Cucsa.049930 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 4.1e-16 Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
BLAST of Cucsa.049930 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 6.0e-15 Identity = 33/73 (45.21%), Postives = 53/73 (72.60%), Query Frame = 1
BLAST of Cucsa.049930 vs. TrEMBL
Match: A0A0A0KBK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429620 PE=4 SV=1) HSP 1 Score: 671.4 bits (1731), Expect = 5.7e-190 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
BLAST of Cucsa.049930 vs. TrEMBL
Match: A0A103Y170_CYNCS (Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_021127 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 1.0e-53 Identity = 136/335 (40.60%), Postives = 199/335 (59.40%), Query Frame = 1
BLAST of Cucsa.049930 vs. TrEMBL
Match: F6HPS6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00140 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 2.9e-53 Identity = 139/345 (40.29%), Postives = 184/345 (53.33%), Query Frame = 1
BLAST of Cucsa.049930 vs. TrEMBL
Match: A0A0V0HZ86_SOLCH (Putative E3 ubiquitin-protein ligase RING1-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50 Identity = 117/291 (40.21%), Postives = 171/291 (58.76%), Query Frame = 1
BLAST of Cucsa.049930 vs. TrEMBL
Match: A0A087GZB2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G255300 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49 Identity = 111/262 (42.37%), Postives = 162/262 (61.83%), Query Frame = 1
BLAST of Cucsa.049930 vs. TAIR10
Match: AT3G60080.1 (AT3G60080.1 RING/U-box superfamily protein) HSP 1 Score: 198.7 bits (504), Expect = 5.5e-51 Identity = 113/275 (41.09%), Postives = 160/275 (58.18%), Query Frame = 1
BLAST of Cucsa.049930 vs. TAIR10
Match: AT2G39720.1 (AT2G39720.1 RING-H2 finger C2A) HSP 1 Score: 95.5 bits (236), Expect = 6.6e-20 Identity = 67/215 (31.16%), Postives = 112/215 (52.09%), Query Frame = 1
BLAST of Cucsa.049930 vs. TAIR10
Match: AT2G44330.1 (AT2G44330.1 RING/U-box superfamily protein) HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19 Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
BLAST of Cucsa.049930 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein) HSP 1 Score: 92.8 bits (229), Expect = 4.2e-19 Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
BLAST of Cucsa.049930 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein) HSP 1 Score: 90.9 bits (224), Expect = 1.6e-18 Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = 1
BLAST of Cucsa.049930 vs. NCBI nr
Match: gi|778728773|ref|XP_004135900.2| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus]) HSP 1 Score: 671.4 bits (1731), Expect = 8.2e-190 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
BLAST of Cucsa.049930 vs. NCBI nr
Match: gi|659122605|ref|XP_008461232.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]) HSP 1 Score: 644.8 bits (1662), Expect = 8.2e-182 Identity = 322/333 (96.70%), Postives = 327/333 (98.20%), Query Frame = 1
BLAST of Cucsa.049930 vs. NCBI nr
Match: gi|1009105994|ref|XP_015901739.1| (PREDICTED: uncharacterized protein LOC107434747 [Ziziphus jujuba]) HSP 1 Score: 219.5 bits (558), Expect = 8.5e-54 Identity = 149/351 (42.45%), Postives = 189/351 (53.85%), Query Frame = 1
BLAST of Cucsa.049930 vs. NCBI nr
Match: gi|976914416|gb|KVI00623.1| (Zinc finger, RING/FYVE/PHD-type [Cynara cardunculus var. scolymus]) HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53 Identity = 136/335 (40.60%), Postives = 199/335 (59.40%), Query Frame = 1
BLAST of Cucsa.049930 vs. NCBI nr
Match: gi|225450287|ref|XP_002271062.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera]) HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53 Identity = 139/345 (40.29%), Postives = 184/345 (53.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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