Cp4.1LG12g07140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG12 : 7184900 .. 7185874 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCTCCGCTGCCACCGCCGCCGCCGCCGAACGGCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTATCTCCTTCTTCGTCTTCTTCGTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCCTTTGCCCTCACTGCCTCACTGACTTCCTTGAACACATGGATTTCACCATACCCACTTCTTCTTCTTCAATTTCCGACCACCCCATTTCCTCTTCTTCCCCTCCAGATTCCGATCCGTCATCCTTCGTCATCGTCGACCCTCTTCCGACCACCTCCGATGACAATTACCTCCTCAGCAGCCCCCAATTCCTCCGCCTTTTCCAGCAGCTCGCTGATTCATCCGACTCCGATTTCGCACCATCTGTACCCTTCAACCCATTTACTCCGATCAAAGCCTCTGTCATGGCGATTCCCACGATTAAAGTCTCCTCCGCCATGCTCGAGGAAGACCCAATTCTAATTTGTGCTATTTGCAAGGATAAGTTCCTTCTTGAGGTGGAAGCCAAACAGCTCCCCTGTTCTCATCTCTATCATCCTGATTGCATTCTTCCATGGCTTTCTAATCATGATTCGTGCCCTCTTTGCCGCTATAAGCTTCCTTCTGATGAACCTTCGGATCATGTGAGATGTAGAGGAGCAACTATGGCCTTATTGAGGGCTAGGGACCTGATGCCTCAAGAAGATAGTTATGGGTTGAGGACTACTCTTGAACATATGGCTAGAAGGCATAGTTCTATTTTTAGTGAAGGAGTTCAAGTGGATTCGTCTCAATCTCCCACTCAGTTGGGGGTTGCTGTGATGGGAAATGGGGAACAGACTGACAGTGTTGAGACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAGTGGTGATGAAAATGGGTTTGTGGTAATGGATGGACCAATAAATGAGGATGCTGGCACCTTAGCTTAG

mRNA sequence

ATGTCCTCCGCCTCCGCTGCCACCGCCGCCGCCGCCGAACGGCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTATCTCCTTCTTCGTCTTCTTCGTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCCTTTGCCCTCACTGCCTCACTGACTTCCTTGAACACATGGATTTCACCATACCCACTTCTTCTTCTTCAATTTCCGACCACCCCATTTCCTCTTCTTCCCCTCCAGATTCCGATCCGTCATCCTTCGTCATCGTCGACCCTCTTCCGACCACCTCCGATGACAATTACCTCCTCAGCAGCCCCCAATTCCTCCGCCTTTTCCAGCAGCTCGCTGATTCATCCGACTCCGATTTCGCACCATCTGTACCCTTCAACCCATTTACTCCGATCAAAGCCTCTGTCATGGCGATTCCCACGATTAAAGTCTCCTCCGCCATGCTCGAGGAAGACCCAATTCTAATTTGTGCTATTTGCAAGGATAAGTTCCTTCTTGAGGTGGAAGCCAAACAGCTCCCCTGTTCTCATCTCTATCATCCTGATTGCATTCTTCCATGGCTTTCTAATCATGATTCGTGCCCTCTTTGCCGCTATAAGCTTCCTTCTGATGAACCTTCGGATCATGTGAGATGTAGAGGAGCAACTATGGCCTTATTGAGGGCTAGGGACCTGATGCCTCAAGAAGATAGTTATGGGTTGAGGACTACTCTTGAACATATGGCTAGAAGGCATAGTTCTATTTTTAGTGAAGGAGTTCAAGTGGATTCGTCTCAATCTCCCACTCAGTTGGGGGTTGCTGTGATGGGAAATGGGGAACAGACTGACAGTGTTGAGACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAGTGGTGATGAAAATGGGTTTGTGGTAATGGATGGACCAATAAATGAGGATGCTGGCACCTTAGCTTAG

Coding sequence (CDS)

ATGTCCTCCGCCTCCGCTGCCACCGCCGCCGCCGCCGAACGGCACACCTACTGGTGCCACGAGTGCGATATGAGCGTCACTTTGGTATCTCCTTCTTCGTCTTCTTCGTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTCTCCTTTGCCCTCACTGCCTCACTGACTTCCTTGAACACATGGATTTCACCATACCCACTTCTTCTTCTTCAATTTCCGACCACCCCATTTCCTCTTCTTCCCCTCCAGATTCCGATCCGTCATCCTTCGTCATCGTCGACCCTCTTCCGACCACCTCCGATGACAATTACCTCCTCAGCAGCCCCCAATTCCTCCGCCTTTTCCAGCAGCTCGCTGATTCATCCGACTCCGATTTCGCACCATCTGTACCCTTCAACCCATTTACTCCGATCAAAGCCTCTGTCATGGCGATTCCCACGATTAAAGTCTCCTCCGCCATGCTCGAGGAAGACCCAATTCTAATTTGTGCTATTTGCAAGGATAAGTTCCTTCTTGAGGTGGAAGCCAAACAGCTCCCCTGTTCTCATCTCTATCATCCTGATTGCATTCTTCCATGGCTTTCTAATCATGATTCGTGCCCTCTTTGCCGCTATAAGCTTCCTTCTGATGAACCTTCGGATCATGTGAGATGTAGAGGAGCAACTATGGCCTTATTGAGGGCTAGGGACCTGATGCCTCAAGAAGATAGTTATGGGTTGAGGACTACTCTTGAACATATGGCTAGAAGGCATAGTTCTATTTTTAGTGAAGGAGTTCAAGTGGATTCGTCTCAATCTCCCACTCAGTTGGGGGTTGCTGTGATGGGAAATGGGGAACAGACTGACAGTGTTGAGACTGTTTCTAGTGTGGCTACTGATGATGGGATTGTAATTGTCAATAGCAGTGGTGATGAAAATGGGTTTGTGGTAATGGATGGACCAATAAATGAGGATGCTGGCACCTTAGCTTAG

Protein sequence

MSSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEHMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLMPQEDSYGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVIVNSSGDENGFVVMDGPINEDAGTLA
Homology
[Close]
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.2e-17
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 110 PQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKD 169
           P    LF+QL+  +     P  P       ++++ A+PTIK++   L       C +CKD
Sbjct: 144 PGLEELFEQLSAGTTRRGPPPAP-------RSAIDALPTIKIAQRHLRSSDSN-CPVCKD 203

Query: 170 KFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPS 211
           +F L  EAKQ+PC+H+YH DCI+PWL  H+SCP+CR +LPS
Sbjct: 204 EFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS 236

[Close]
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.9e-15
Identity = 67/207 (32.37%), Postives = 102/207 (49.28%), Query Frame = 1 

Query: 28  LVSPSSSSSSSSSSSS----------SSSSSLLCPHCLTDFLEHMDFTIPTSSSSISDHP 87
           L+ PSSSS+++SSS+S           + S    P     F    +      SS      
Sbjct: 94  LLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLNDLRSSGAQIEF 153

Query: 88  ISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFNPFT 147
           +  ++P D           LP    D ++   P   +L QQLA++  + +         T
Sbjct: 154 VIQNNPSDQGFR-------LPANIGDYFI--GPGLEQLIQQLAENDPNRYG--------T 213

Query: 148 P--IKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWL 207
           P   K+++ A+P + ++ + L  +    CA+C D F    EAKQ+PC HLYH DC+LPWL
Sbjct: 214 PPASKSAIEALPLVNITKSNLNSE-FNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL 273

Query: 208 SNHDSCPLCRYKLPSDEPSDHVRCRGA 223
             H+SCP+CR++LP+D+P    R RGA
Sbjct: 274 ELHNSCPVCRHELPTDDPDYERRVRGA 282

[Close]
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.9e-15
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 96  PLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAM 155
           PLP +  +  +L    F RL +QL+    S        NP    K+++ ++P +++S   
Sbjct: 136 PLPDSVSE--ILMGSGFERLLEQLSQIEASATGIGRSGNP-PASKSAIESLPRVEISDCH 195

Query: 156 LEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSD 212
           +  +    CA+C + F  E EA+++PC HL+H DCI+PWLS  +SCP+CR++LPS+
Sbjct: 196 IGSEAN--CAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSE 246

[Close]
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-14
Identity = 32/73 (43.84%), Postives = 53/73 (72.60%), Query Frame = 1 

Query: 140 KASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHD 199
           K+++ A+ T +VSS+  E + +++CA+CKD  ++    K+LPC H YH DCI+PWL   +
Sbjct: 235 KSAIEALETFEVSSS--EGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRN 294

Query: 200 SCPLCRYKLPSDE 213
           SCP+CR++L +D+
Sbjct: 295 SCPVCRFQLETDD 305

[Close]
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.4e-14
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1 

Query: 96  PLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAM 155
           PLP +  +  +L    F RL +QL+    S        NP    K+++ ++P +++S   
Sbjct: 152 PLPDSVSE--ILMGSGFERLLEQLSQIEASGNGIGRSGNP-PASKSAIESLPRVEISDCH 211

Query: 156 LEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSD 212
            + +    CA+C + F   +E +++PC H++H DCI+PWLS  +SCP+CR++LPSD
Sbjct: 212 TKAEAN--CAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFELPSD 262

[Close]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match: A0A0A0KBK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429620 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.5e-147
Identity = 278/323 (86.07%), Postives = 297/323 (91.95%), Query Frame = 1 

Query: 1   MSSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLE 60
           MSSA+    AAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSS  SL+CPHCLTDF+E
Sbjct: 1   MSSATITATAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSS--SLVCPHCLTDFIE 60

Query: 61  HMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLA 120
           HMDFTIPTSSSSISD+P SSS P DSDPSSFV VDPLP TSDDNYLL+SPQFLRLFQ LA
Sbjct: 61  HMDFTIPTSSSSISDNPNSSSPPTDSDPSSFVFVDPLPITSDDNYLLNSPQFLRLFQHLA 120

Query: 121 DSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 180
           DSS+SDF PSVPFNPFTPIKASVMAIPTIKV+SA+L+EDP+LICAICKD+FLLEVEAKQL
Sbjct: 121 DSSESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQL 180

Query: 181 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLMPQEDSYG 240
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSD+PSD VRCR  T ALLRARDLM QEDSYG
Sbjct: 181 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDDPSDRVRCR--TSALLRARDLMHQEDSYG 240

Query: 241 LRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVIV 300
           LRTTLE MARRHSSI SEG+ VDS QSPTQ GVA+M +GEQTDSVETVSSVATDDGIVIV
Sbjct: 241 LRTTLELMARRHSSISSEGIHVDSFQSPTQFGVAMMESGEQTDSVETVSSVATDDGIVIV 300

Query: 301 NSSGDENGFVVMDGPINEDAGTL 324
           NS+GDENGF+ MDGPI EDAGT+
Sbjct: 301 NSNGDENGFLGMDGPITEDAGTV 319

[Close]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match: A0A0V0HZ86_SOLCH (Putative E3 ubiquitin-protein ligase RING1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.8e-46
Identity = 113/281 (40.21%), Postives = 165/281 (58.72%), Query Frame = 1 

Query: 15  HTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEHMDFTIPTSSSSIS 74
           HT+WCHECDMSV L+ P+ ++               CPHC +DFLEHMD   PT      
Sbjct: 13  HTFWCHECDMSVFLLHPTPNNPR-------------CPHCHSDFLEHMDSITPTILPQFP 72

Query: 75  DHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFN 134
           +HP         +P+S +      T SDDN+LL+SP   RL + L  ++D   AP+   +
Sbjct: 73  NHP---------NPTSDIETPTTFTPSDDNFLLNSPYLHRLIRHLTTTND---APTPNPH 132

Query: 135 PFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPW 194
             +  +++V A+  ++++S+MLE DP + CA+CKD+FLL+++ K LPC H+YH DCILPW
Sbjct: 133 NNSASRSAVAALELLQITSSMLENDPDIPCAVCKDQFLLDMQVKMLPCKHMYHSDCILPW 192

Query: 195 LSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLMPQEDSYGLRTTLEHMARRHSS 254
           L  ++SCP+CR++LP++E     R +    A+     L  QED +G R TL  +ARRH  
Sbjct: 193 LEMNNSCPVCRFQLPTEEDEVCRRRQNFVAAMRLEEFLGEQEDLFGFRRTLRRVARRHHL 252

Query: 255 IFSEGVQVDSSQ---SPTQLGVAVMGNG--EQTDSVETVSS 291
              +  + DS +   SPTQ+G    G+G   + +SVETVSS
Sbjct: 253 DREDTTRGDSLEFLLSPTQIGQTGQGDGVVARANSVETVSS 268

[Close]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match: F6HPS6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00140 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 129/305 (42.30%), Postives = 171/305 (56.07%), Query Frame = 1 

Query: 3   SASAAT-------AAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCL 62
           SA+AAT       A A +R TYWCHECDMSVTL           S SSSSS +LLCPHC 
Sbjct: 2   SATAATTPTTPTAATAIDRRTYWCHECDMSVTL-----------SPSSSSSPTLLCPHCH 61

Query: 63  TDFLEHMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRL 122
           +DFLE MD   P                P+ +P++     P  +   +N+LL SP   RL
Sbjct: 62  SDFLEEMDSPNPN---------------PNPNPTA-----PNFSFHSENFLLDSPYLHRL 121

Query: 123 FQQLADSSD--------SDFAPSVPFNP--FTPIKASVMAIPTIKVSSAMLEEDPILICA 182
              L   SD        SD  P    NP      +AS+ A+PT K++ + L+ DPIL CA
Sbjct: 122 IHHLTHPSDTNNDGNDSSDLPPPRYLNPNSVAASRASLEALPTFKITPSFLQLDPILFCA 181

Query: 183 ICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGATMA 242
           +CKD+F+++VEAK+LPC+H+YH DCILPWLS  +SCPLCR++LP+DE  D     GAT+ 
Sbjct: 182 VCKDQFVVDVEAKRLPCNHIYHSDCILPWLSQQNSCPLCRFRLPTDEGEDSGDA-GATVT 241

Query: 243 LLRARDLMPQEDSYGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSV 291
           +    DLM   + +GL +TL H+ARR+  +F       S++   Q     +G     +SV
Sbjct: 242 MTFG-DLMEDHELFGLGSTLRHIARRNRLVF----PALSAEGQAQAQGESLG---PDNSV 266

[Close]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match: A0A103Y170_CYNCS (Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_021127 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 139/381 (36.48%), Postives = 209/381 (54.86%), Query Frame = 1 

Query: 2   SSASAATAAAA-----ERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLT 61
           ++A+AAT  AA     +RHTYWCHECDMS++L+             SS+++SLLCPHC +
Sbjct: 13  AAAAAATVTAASNTSMDRHTYWCHECDMSISLI------------PSSTTASLLCPHCNS 72

Query: 62  DFLEHMDFTIP-TSSSSISDHPISSSSPPDSDPSSFV--------IVDP------LPTTS 121
           DFLE +D  I   ++S+++++P    +P D D S+ V         +DP       PTT 
Sbjct: 73  DFLEELDSPITFNNTSNVNNNP----NPDDHDDSNHVSSQLLFPSFLDPSLPAADYPTTF 132

Query: 122 DDNYLLS--------SPQFLRLFQQLADSSDSDFAPSVPFNPF--TPIKASVMAIPTIKV 181
               +          SP F R+   L +S DS  + +   +       K+++ AIP++K+
Sbjct: 133 QFPPVAPSDDNFLLDSPYFHRVIHHLFNSEDSSPSTTATTSRHHSPASKSAIEAIPSVKI 192

Query: 182 SSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSD 241
           +SA LE DPI+ICA+CKD+F+++ E K+LPC H+YHPDCILPWLS H+SCP+CR++LP++
Sbjct: 193 TSAFLEIDPIVICAVCKDQFVIDDETKELPCKHMYHPDCILPWLSQHNSCPVCRFQLPTE 252

Query: 242 EPSDHVRCRGATMA-LLRARDLMPQED-----SYGLRTTLEHMARRHSSIFS------EG 301
                ++ R  + + +LR  DL+  ED      +GLR    H+ARRH  +F         
Sbjct: 253 AVDGDLKVRRRSRSRVLRLGDLIDDEDDEELLGFGLR----HLARRHRLVFPMRHHHYRH 312

Query: 302 VQVDSSQ-----SPTQLG----VAVMGNGEQTDSVETVSS--------VATDDGIVIVNS 324
            QV+  +     S TQ+G    V V+ +  +T+SVETVSS         A D G + V+ 
Sbjct: 313 PQVEEEEPEVLFSSTQIGEEVAVDVLPDSGRTNSVETVSSWPSWPVDVGAVDGGEIAVSP 362

[Close]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match: Q002B3_TOBAC (Cytokinesis negative regulator RCP1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.3e-41
Identity = 124/313 (39.62%), Postives = 171/313 (54.63%), Query Frame = 1 

Query: 1   MSSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLE 60
           MS+ + AT      HT+WCHECDMSV L+   S+                CPHC +DFLE
Sbjct: 1   MSTTTTATPPQ-HHHTFWCHECDMSVFLLHLPSTDPPR------------CPHCHSDFLE 60

Query: 61  HMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLA 120
            MD   PT      + P S+ +  D   +         T SDDN+LL SP   RL   L 
Sbjct: 61  QMDSFTPTLLPQFPNQPDSNPNLEDLISTDLNTATNF-TPSDDNFLLDSPYLHRLIHHLT 120

Query: 121 DSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 180
            ++D+   P+   +P +  KA++ A+  IK+SS MLE DP++ C +CKD FLL++E K L
Sbjct: 121 TANDAPI-PNRQHSPAS--KAAMEALEGIKISSLMLENDPVIPCPVCKDNFLLDMEVKML 180

Query: 181 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDH--VRCRGATMALLRARDLM-PQED 240
           PC H+YH DCILPWL  ++SCP+CR+KLP++E  D   +R R   +  +R  +++  +ED
Sbjct: 181 PCKHMYHSDCILPWLEVNNSCPVCRFKLPTEEEDDEECIRRRERFLGAMRLGEILAEEED 240

Query: 241 SYGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNG--EQTDSVETVSSVATDD 300
            +G R TL  +ARRH        Q+D  +S   +G A  G G   + +SVETVSS     
Sbjct: 241 LFGFRRTLRRVARRH--------QLDGGES--TIGQAGQGVGVVARANSVETVSS--WPS 284

Query: 301 GIVIVNSSGDENG 309
             V   S GDE G
Sbjct: 301 WPVENGSDGDEVG 284

[Close]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match: AT3G60080.1 (AT3G60080.1 RING/U-box superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 4.1e-43
Identity = 110/277 (39.71%), Postives = 158/277 (57.04%), Query Frame = 1 

Query: 1   MSSASAATAAA---AERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTD 60
           MSS++  T       ER TYWCHECDMS++L+S        SS S S SS LLCP C  D
Sbjct: 1   MSSSTTTTTTVHGEPERRTYWCHECDMSLSLLS--------SSDSDSDSSPLLCPQCRVD 60

Query: 61  FLEHMDFTIPTSSSSISDHPISSSSPPDS------DPSSFVIVDPLPTTSDDNYLLSSPQ 120
           FLE MD    +SSS++ D  I      D       D   +  VDP    SDDN+LL SP 
Sbjct: 61  FLERMDHD--SSSSNLFDVTIGDFEEQDGENDDEDDEEDWCFVDPA-VNSDDNFLLDSPY 120

Query: 121 FLRLFQQLADSSDSDFAPSVPFNPFTPIKAS-VMAIPTIKVSSAML------EEDPILIC 180
             RL + LA  +    + S   +  + +K+S + +IPTI++SS++L      + D +L+C
Sbjct: 121 LHRLLRHLASDNSGSSSSSSSSSSSSLLKSSDIDSIPTIQISSSLLCSTDDSDPDSVLLC 180

Query: 181 AICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSDE------PSDHVR 240
           A+CK+ F++   A++LPCSH+YH DCI+PWLS+H+SCPLCR++LP+            +R
Sbjct: 181 AVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTTAKVGIGGSEAEMR 240

Query: 241 CRGATMALLRARDLMPQEDSYGLRTTLEHMARRHSSI 256
            R + +A + A     ++D  G+R  L  +ARRH  +
Sbjct: 241 IRLSDLATIAADGDDVEDDWLGIRNALRRLARRHEQM 266

[Close]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-18
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 110 PQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKD 169
           P    L +QL+  +     P  P       K+S+ A+PTIK++   L+      C +CKD
Sbjct: 140 PGLEELIEQLSSGTHHRGPPPAP-------KSSIDALPTIKITQKHLKSSDSH-CPVCKD 199

Query: 170 KFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPS 211
           +F L+ EAKQ+PC H+YH DCI+PWL  H+SCP+CR +LPS
Sbjct: 200 EFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPS 232

[Close]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match: AT2G44330.1 (AT2G44330.1 RING/U-box superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-18
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 1 

Query: 59  LEHMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQ 118
           LE  D+T P  +  +    + S+SPP             P  +  +Y  SS  F      
Sbjct: 10  LEMRDYTCPECNIGLRVLSLPSASPPYC-----------PLCNVASYFTSSTPFEVGPNP 69

Query: 119 LADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLE----EDPILICAICKDKFLLE 178
             D  +S F   +             ++PTIK+SS+ML     +D  L CAIC++ F++ 
Sbjct: 70  FEDDEESQFLDPME------------SLPTIKISSSMLSSASSDDSALPCAICREDFVVG 129

Query: 179 VEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSD 216
             A++LPC+HLYH DCI+PWL++H+SCPLCR +LP     D
Sbjct: 130 ESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSED 147

[Close]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-18
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 110 PQFLRLFQQLADSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKD 169
           P    LF+QL+  +     P  P       ++++ A+PTIK++   L       C +CKD
Sbjct: 144 PGLEELFEQLSAGTTRRGPPPAP-------RSAIDALPTIKIAQRHLRSSDSN-CPVCKD 203

Query: 170 KFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPS 211
           +F L  EAKQ+PC+H+YH DCI+PWL  H+SCP+CR +LPS
Sbjct: 204 EFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS 236

[Close]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-17
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1 

Query: 94  VDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFNPFTPI--KASVMAIPTIKV 153
           +D +P  S  +Y +  P F  L Q+LA++  + +         TP   K +V A+ T+K+
Sbjct: 167 MDSVPAGSLGDYFIG-PGFEMLLQRLAENDPNRYG--------TPPAKKEAVEALATVKI 226

Query: 154 SSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSD 213
                     L C++C D F +  EAK +PC+H +H DC+LPWL  H SCP+CRY+LP+D
Sbjct: 227 EET-------LQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPAD 271

[Close]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match: gi|659122605|ref|XP_008461232.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 536.6 bits (1381), Expect = 3.1e-149
Identity = 282/323 (87.31%), Postives = 298/323 (92.26%), Query Frame = 1 

Query: 1   MSSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLE 60
           MSSA+   AAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSS   SLLCPHCLTDFLE
Sbjct: 1   MSSATITAAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSS---SLLCPHCLTDFLE 60

Query: 61  HMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLA 120
           HMDFTIPTSSSSISDHP SSSSP DSDPSSFV+VDPLP TSDDNYLL+SPQFLRLFQ LA
Sbjct: 61  HMDFTIPTSSSSISDHPNSSSSPTDSDPSSFVVVDPLPITSDDNYLLNSPQFLRLFQHLA 120

Query: 121 DSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 180
           DSS+SDF PSVPFNPFTPIKASVMAIPTIKV+SA+L+ED +LICAICKD+FLLEVEAKQL
Sbjct: 121 DSSESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDQVLICAICKDQFLLEVEAKQL 180

Query: 181 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLMPQEDSYG 240
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSD+PSD VRCR  T ALLRARDLM QEDSYG
Sbjct: 181 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDDPSDRVRCR--TSALLRARDLMHQEDSYG 240

Query: 241 LRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVIV 300
           LRTTLE MARRHSSI SEG+ VDS QSPTQ GVA+M +GEQTDSVETVSSVATDDGIVIV
Sbjct: 241 LRTTLELMARRHSSISSEGINVDSFQSPTQFGVAMMRSGEQTDSVETVSSVATDDGIVIV 300

Query: 301 NSSGDENGFVVMDGPINEDAGTL 324
           NS+GDENGFV MDGPI EDAGT+
Sbjct: 301 NSNGDENGFVGMDGPITEDAGTV 318

[Close]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match: gi|778728773|ref|XP_004135900.2| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 530.4 bits (1365), Expect = 2.2e-147
Identity = 278/323 (86.07%), Postives = 297/323 (91.95%), Query Frame = 1 

Query: 1   MSSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLE 60
           MSSA+    AAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSS  SL+CPHCLTDF+E
Sbjct: 1   MSSATITATAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSS--SLVCPHCLTDFIE 60

Query: 61  HMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLA 120
           HMDFTIPTSSSSISD+P SSS P DSDPSSFV VDPLP TSDDNYLL+SPQFLRLFQ LA
Sbjct: 61  HMDFTIPTSSSSISDNPNSSSPPTDSDPSSFVFVDPLPITSDDNYLLNSPQFLRLFQHLA 120

Query: 121 DSSDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 180
           DSS+SDF PSVPFNPFTPIKASVMAIPTIKV+SA+L+EDP+LICAICKD+FLLEVEAKQL
Sbjct: 121 DSSESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQL 180

Query: 181 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLMPQEDSYG 240
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSD+PSD VRCR  T ALLRARDLM QEDSYG
Sbjct: 181 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDDPSDRVRCR--TSALLRARDLMHQEDSYG 240

Query: 241 LRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVIV 300
           LRTTLE MARRHSSI SEG+ VDS QSPTQ GVA+M +GEQTDSVETVSSVATDDGIVIV
Sbjct: 241 LRTTLELMARRHSSISSEGIHVDSFQSPTQFGVAMMESGEQTDSVETVSSVATDDGIVIV 300

Query: 301 NSSGDENGFVVMDGPINEDAGTL 324
           NS+GDENGF+ MDGPI EDAGT+
Sbjct: 301 NSNGDENGFLGMDGPITEDAGTV 319

[Close]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match: gi|1009105994|ref|XP_015901739.1| (PREDICTED: uncharacterized protein LOC107434747 [Ziziphus jujuba])

HSP 1 Score: 199.5 bits (506), Expect = 8.9e-48
Identity = 142/338 (42.01%), Postives = 186/338 (55.03%), Query Frame = 1 

Query: 1   MSSASAATAAAA-----ERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCL 60
           MSSA+A  A  +     ERHTYWCHECD+SV+L                SSSSLLCPHC 
Sbjct: 1   MSSATATDALISVTDPMERHTYWCHECDLSVSL--------------RPSSSSLLCPHCF 60

Query: 61  TDFLEHMDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRL 120
            +FLE MD       S++S  P+S   P  S    F +        DDN LL SP   RL
Sbjct: 61  GNFLELMD-------SALS--PLSPPPPRSSSDIPFPLSAAAAAADDDNSLLDSPYLHRL 120

Query: 121 FQQLA--DSSDSDFAPSVPFNPFTPIK-ASVMAIPTIKVSSAMLEEDPILICAICKDKFL 180
            Q L   D   ++  PS   +   P   A+V A+ T+K+ +++LE DP+L C +CKD+F+
Sbjct: 121 VQHLTADDYYSNNPNPSTTNSSSLPASNAAVEALITVKIVASLLELDPLLFCPVCKDQFI 180

Query: 181 LEVEAKQLPCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRG--ATMALLRAR 240
           ++VEAKQLPC HLYHPDCILPWL+NH +CP+CR++LP+   +      G  AT  L    
Sbjct: 181 VDVEAKQLPCKHLYHPDCILPWLANHSTCPVCRFQLPTRPINPRRTTSGLVATTPLRFGD 240

Query: 241 DLMPQEDSYGLRTTLEHMARRHSSIFSEGVQVD----SSQSPTQLGVAV---MGNGEQTD 300
            L  +ED +G R TL +MARRH  + SE +  +    SS SPTQ+  A    MG   +T 
Sbjct: 241 VLTGEEDWFGYRNTLRYMARRHMHLMSEAIGDENSNLSSLSPTQMAEAAEADMGFVARTS 300

Query: 301 SVETVSSVATDDGIVIVNSSGDENGFVVMDGPINEDAG 322
           SVETVSS   + G      +G     + + G  NED G
Sbjct: 301 SVETVSSWPVEAG------AGSRE--MDVSGRANEDGG 307

[Close]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match: gi|460406771|ref|XP_004248833.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum])

HSP 1 Score: 198.4 bits (503), Expect = 2.0e-47
Identity = 114/282 (40.43%), Postives = 170/282 (60.28%), Query Frame = 1 

Query: 15  HTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEHMDFTIPTSSSSIS 74
           HT+WCHECDMSV L+ P  ++               CPHC +DFLEHMD   PT      
Sbjct: 13  HTFWCHECDMSVFLLHPPPNNPR-------------CPHCHSDFLEHMDSFTPTILPQFP 72

Query: 75  DHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFN 134
           +HP         +P+S +      T SDDN+LL+SP   RL + L  ++D   AP+   +
Sbjct: 73  NHP---------NPTSDIETPTTFTPSDDNFLLNSPYLHRLIRHLTTTND---APTPNLH 132

Query: 135 PFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPW 194
             +  +++V A+  ++++S+MLE DP+++CA+CKD+FLL+++ K LPC H+YH DCILPW
Sbjct: 133 NNSASRSAVAALELLQITSSMLENDPVILCAVCKDQFLLDMQVKMLPCKHMYHSDCILPW 192

Query: 195 LSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLM-PQEDSYGLRTTLEHMARRHS 254
           L  ++SCP+CR++LP++E  +  R R   +A +R  + +  QED +G R TL  +ARRH 
Sbjct: 193 LEMNNSCPVCRFQLPTEE-DEVCRRRQDFVAAMRLEEFLGEQEDLFGFRRTLRRVARRHQ 252

Query: 255 SIFSEGVQVDSSQ---SPTQLGVAVMGNG--EQTDSVETVSS 291
               +  + DS +   SPTQ+G    G+G   + +SVETVSS
Sbjct: 253 LDREDTTRGDSLEFLLSPTQIGQTGQGDGVVARANSVETVSS 268

[Close]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match: gi|970054321|ref|XP_015088798.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum pennellii])

HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47
Identity = 114/282 (40.43%), Postives = 168/282 (59.57%), Query Frame = 1 

Query: 15  HTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEHMDFTIPTSSSSIS 74
           HT+WCHECDMSV L+ P  ++               CPHC +DFLEHMD   PT      
Sbjct: 13  HTFWCHECDMSVFLLHPPPNNPH-------------CPHCHSDFLEHMDSITPTILPQFP 72

Query: 75  DHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADSSDSDFAPSVPFN 134
           +HP         +P+S +      T SDDN+LL+SP   RL + L  ++D   AP+   +
Sbjct: 73  NHP---------NPTSDIETPTTFTPSDDNFLLNSPYLHRLIRHLTTTND---APTPNLH 132

Query: 135 PFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLPCSHLYHPDCILPW 194
             +  +++V A+  ++++S+MLE DP+++CA+CKD+FLL+++ K LPC H+YH DCILPW
Sbjct: 133 NNSASRSAVAALELLQITSSMLEHDPVILCAVCKDQFLLDMQVKMLPCKHIYHSDCILPW 192

Query: 195 LSNHDSCPLCRYKLPSDEPSDHVRCRGATMALLRARDLM-PQEDSYGLRTTLEHMARRHS 254
           L   +SCP+CR++LP++E  +  R R   +A +R  + +  QED +G R TL  +ARRH 
Sbjct: 193 LEMKNSCPVCRFQLPTEE-DEVCRRRQDFVAAMRLEEFLGEQEDLFGFRRTLRRVARRHQ 252

Query: 255 SIFSEGVQVDSSQ---SPTQLGVAVMGNG--EQTDSVETVSS 291
               +    DS +   SPTQ+G    G+G   + +SVETVSS
Sbjct: 253 LDREDTTMGDSLEFLLSPTQIGQTGQGDGVVARANSVETVSS 268

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH6.2e-1742.57Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RING1_GOSHI9.9e-1532.37E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RDUF2_ARATH9.9e-1536.21E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
CIP8_ARATH1.7e-1443.84E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1[more]
RDUF1_ARATH6.4e-1434.48E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
BLAST of Cp4.1LG12g07140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBK3_CUCSA1.5e-14786.07Uncharacterized protein OS=Cucumis sativus GN=Csa_7G429620 PE=4 SV=1[more]
A0A0V0HZ86_SOLCH5.8e-4640.21Putative E3 ubiquitin-protein ligase RING1-like OS=Solanum chacoense PE=4 SV=1[more]
F6HPS6_VITVI4.9e-4542.30Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00140 PE=4 SV=... [more]
A0A103Y170_CYNCS1.6e-4336.48Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_0211... [more]
Q002B3_TOBAC7.3e-4139.62Cytokinesis negative regulator RCP1 OS=Nicotiana tabacum PE=2 SV=1[more]
BLAST of Cp4.1LG12g07140 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60080.14.1e-4339.71 RING/U-box superfamily protein[more]
AT3G56580.21.6e-1843.56 RING/U-box superfamily protein[more]
AT2G44330.13.5e-1834.78 RING/U-box superfamily protein[more]
AT2G40830.23.5e-1842.57 RING-H2 finger C1A[more]
AT1G55530.16.6e-1738.02 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG12g07140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122605|ref|XP_008461232.1|3.1e-14987.31PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|778728773|ref|XP_004135900.2|2.2e-14786.07PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|1009105994|ref|XP_015901739.1|8.9e-4842.01PREDICTED: uncharacterized protein LOC107434747 [Ziziphus jujuba][more]
gi|460406771|ref|XP_004248833.1|2.0e-4740.43PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum lycopersicum][more]
gi|970054321|ref|XP_015088798.1|3.4e-4740.43PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum pennellii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07140.1Cp4.1LG12g07140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 164..205
score: 2.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 164..204
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 164..205
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 163..208
score: 7.8
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 48..240
score: 1.8E-49coord: 8..32
score: 1.8E-49coord: 279..290
score: 1.8
NoneNo IPR availablePANTHERPTHR22763:SF85SUBFAMILY NOT NAMEDcoord: 8..32
score: 1.8E-49coord: 48..240
score: 1.8E-49coord: 279..290
score: 1.8
NoneNo IPR availablePFAMPF14369zinc_ribbon_9coord: 16..62
score: 1.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 146..211
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07140Cucsa.049930Cucumber (Gy14) v1cgycpeB0046
Cp4.1LG12g07140CmaCh17G009230Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07140CmoCh17G008940Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07140Cla015285Watermelon (97103) v1cpewmB131
Cp4.1LG12g07140Csa7G429620Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07140MELO3C023504Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07140ClCG09G003690Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07140CSPI07G19690Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07140Lsi02G026250Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07140MELO3C023504.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07140CsaV3_7G031510Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07140Bhi09G000477Wax gourdcpewgoB0201
Cp4.1LG12g07140CsGy7G018010Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07140Carg18712Silver-seed gourdcarcpeB0493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07140Cucurbita pepo (Zucchini)cpecpeB156
Cp4.1LG12g07140Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07140Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07140Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g07140Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g07140Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g07140Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07140Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g07140Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g07140Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07140Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g07140Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g07140Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g07140Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g07140Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g07140Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g07140Silver-seed gourdcarcpeB0631
Cp4.1LG12g07140Silver-seed gourdcarcpeB0732
Cp4.1LG12g07140Silver-seed gourdcarcpeB1144