Cucsa.038030 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATGGGGAGTGAGAAAGGCATAATTTGAGTGAAGGGAAAGGGAAGAGTTGTGGGAAAGCTGAGGGAAGCTGAAGAAAAGTTTTTGTTTtGCATGAAGAAACTGAGGTAAAATTATGATCCATTTATCAACTTTTTTCTGGCTTTGATGCATATAATCCCTTAAGTCAGATTTGAGAACGACAAGTGATGATAtCTTGAATCCAATCAATAATCTGTATTCATTACTTTTTTGTATTTCTTCACAATAGATGTAACATTGATGAAATTTTTGCATTATCTCTCAAACAAAATATTGTATGTTTTAAGTATATCTACTCTTAAATTCATAATTAAACAGCCTCGTTGTTGTATAGTTGTCTGGCATGAGACAAGTTTGACTTTTAGAATGCTAGGAGCCCATGCCCTGTGGTATCAACAAGTTAGGATTTGTATTATATTGTAATATTTTCCATTTGGTTGCTGATATCAAAACCAACTTGTGAGTTGCTGATATCGAAACCAATTTATGAGTTTTTGATATCAAAATTGAGTTATAAGTATTATGTTTTCCGTACGTCATTTGGTGTTTGTGTCTGCTATTACGCTAAAAAAGTTCCCATTTTGACTTGATCAGGTTCTTGTTTGAATTGTTATTGGATCCAACATCGTTATCTGATAAAACAGCACACGTAAATTTGACATTTTTATGTACTTGCTTTGTGAATATTGCTGTTAAGTTGACTATAGTTTCTAAAAATATGCCCTTTTCCGCATTGCCAGGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTcGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA ATGTATGGGGAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTCGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA ATGTATGGGGAGTACAGAGCAGTGACAAGTGCATACTACAGAGGTGCAGTGGGAGCGATGCTAGTTTATGATATGACGAAGCGCCAGTCGTTCGACCACATGGCAAGGTGGCTGGAGGAACTTAGAGGGCACGCTGATAAGAACATCGTTATAATGCTCATTGGAAACAAGTGCGATTTAGGAAGTCTCCGAGCAGTGCCAACAGAAGATGCACAAGAATTTGCTGAAAGAGAAAACCTGTTCTTCATGGAGACATCGGCTCTGGAGTCCACAAATGTcGAAACTGCATTCTTCACAATTCTAACAGAGATTTATAGGATAATCAGCAAGAAAAGTCTTGCAGCTGGGGAAGAGATAGATATTGGTTCGAATCCAGCCCTGTTTAAAGGGACTAGTATAGTTGTTCCTGGACAAGACCAGGATTCTGGGAGAAAAGGTTGTTGCTTCGCGTCATGA MYGEYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAERENLFFMETSALESTNVETAFFTILTEIYRIISKKSLAAGEEIDIGSNPALFKGTSIVVPGQDQDSGRKGCCFAS*
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RAA4D_ARATH (Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 5.1e-62 Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 1
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RLGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2) HSP 1 Score: 233.0 bits (593), Expect = 2.1e-60 Identity = 116/147 (78.91%), Postives = 126/147 (85.71%), Query Frame = 1
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RAA4C_ARATH (Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 5.2e-59 Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 8.9e-51 Identity = 104/149 (69.80%), Postives = 121/149 (81.21%), Query Frame = 1
BLAST of Cucsa.038030 vs. Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 8.4e-49 Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 1
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A0A0KW90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152280 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 8.6e-77 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Cucsa.038030 vs. TrEMBL
Match: V4S363_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005824mg PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 6.4e-64 Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A067F1B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027382mg PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 6.4e-64 Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1
BLAST of Cucsa.038030 vs. TrEMBL
Match: A0A061EWF7_THECC (RAB GTPase A4D OS=Theobroma cacao GN=TCM_024843 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 2.7e-62 Identity = 122/144 (84.72%), Postives = 130/144 (90.28%), Query Frame = 1
BLAST of Cucsa.038030 vs. TrEMBL
Match: B9T2D5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 2.7e-62 Identity = 122/148 (82.43%), Postives = 130/148 (87.84%), Query Frame = 1
BLAST of Cucsa.038030 vs. TAIR10
Match: AT3G12160.1 (AT3G12160.1 RAB GTPase homolog A4D) HSP 1 Score: 238.4 bits (607), Expect = 2.8e-63 Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 1
BLAST of Cucsa.038030 vs. TAIR10
Match: AT5G47960.1 (AT5G47960.1 RAB GTPase homolog A4C) HSP 1 Score: 228.4 bits (581), Expect = 2.9e-60 Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1
BLAST of Cucsa.038030 vs. TAIR10
Match: AT5G65270.1 (AT5G65270.1 RAB GTPase homolog A4A) HSP 1 Score: 188.3 bits (477), Expect = 3.4e-48 Identity = 98/147 (66.67%), Postives = 116/147 (78.91%), Query Frame = 1
BLAST of Cucsa.038030 vs. TAIR10
Match: AT4G39990.1 (AT4G39990.1 RAB GTPase homolog A4B) HSP 1 Score: 184.9 bits (468), Expect = 3.7e-47 Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 1
BLAST of Cucsa.038030 vs. TAIR10
Match: AT1G28550.1 (AT1G28550.1 RAB GTPase homolog A1I) HSP 1 Score: 172.6 bits (436), Expect = 1.9e-43 Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|449464898|ref|XP_004150166.1| (PREDICTED: ras-related protein RABA4d [Cucumis sativus]) HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|659121765|ref|XP_008460801.1| (PREDICTED: ras-related protein RABA4d [Cucumis melo]) HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75 Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|567857618|ref|XP_006421492.1| (hypothetical protein CICLE_v10005824mg [Citrus clementina]) HSP 1 Score: 251.5 bits (641), Expect = 9.2e-64 Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = 1
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|1009106149|ref|XP_015872112.1| (PREDICTED: ras-related protein RABA4d [Ziziphus jujuba]) HSP 1 Score: 249.6 bits (636), Expect = 3.5e-63 Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1
BLAST of Cucsa.038030 vs. NCBI nr
Match: gi|1009106042|ref|XP_015866809.1| (PREDICTED: ras-related protein RABA4d-like [Ziziphus jujuba]) HSP 1 Score: 249.6 bits (636), Expect = 3.5e-63 Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|