Cucsa.032800 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCGTAAGCTGTTTTATCCTGTTGTAGCTTAAGAGGAATCTATTAGCACTGTTCACCCAACATCTTGACATTTGTTTTCTTTAATGGATGTTAAACTCTTGATTCAGATCAGATTTTTACTACATTGTGGCTAAAGGCTGCAAATATGATATCCCTTCTCAATTGCCTATTGTGAGCTATCTTGTTTGCCATTAAGTCAATTTCCAACTCTTATATCGTGAAAATATTCAGAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGTAATTTTCTTTAACATGAGATACTCATAGCTTTTTTGTCTCCGCTTCTGAAGTCAAACCATAAGGTCTATAGTTCTGCTGATAAATGTCTAATTATTTTATTATGCAGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGTACGTTATTGTTGTTCTCTGCATTTGTATTTTTATTGTTTTTtATTTTCTTAACTTAAAAACTGTTTCGCATAACAGGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTGTAACATACAGGGGCTACTTCTAAGTATTTTGTTTCTTCTCGTTGATTTTTTAATTCTTAATTTTATTTTGTTCAAGACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA MLYLQIPTPILYGSVVYVLFSRHIFHYMPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKASFTILGILSNGGLK
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48 Identity = 90/131 (68.70%), Postives = 112/131 (85.50%), Query Frame = 1
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36 Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 1
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH1_ARATH (DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana GN=At2g35920 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 8.6e-11 Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A0A0L9F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228370 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 1.9e-78 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Cucsa.032800 vs. TrEMBL
Match: B9SSN0_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51 Identity = 100/134 (74.63%), Postives = 117/134 (87.31%), Query Frame = 1
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061DYH6_THECC (ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50 Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061E4D8_THECC (ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50 Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061DXK0_THECC (ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50 Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein) HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49 Identity = 90/131 (68.70%), Postives = 112/131 (85.50%), Query Frame = 1
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein) HSP 1 Score: 152.5 bits (384), Expect = 2.5e-37 Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1
BLAST of Cucsa.032800 vs. TAIR10
Match: AT2G35920.1 (AT2G35920.1 RNA helicase family protein) HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12 Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1
BLAST of Cucsa.032800 vs. TAIR10
Match: AT2G30800.1 (AT2G30800.1 helicase in vascular tissue and tapetum) HSP 1 Score: 64.7 bits (156), Expect = 7.0e-11 Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G48650.2 (AT1G48650.2 DEA(D/H)-box RNA helicase family protein) HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10 Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 1
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|700202476|gb|KGN57609.1| (hypothetical protein Csa_3G228370 [Cucumis sativus]) HSP 1 Score: 300.1 bits (767), Expect = 2.8e-78 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo]) HSP 1 Score: 272.7 bits (696), Expect = 4.8e-70 Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo]) HSP 1 Score: 272.7 bits (696), Expect = 4.8e-70 Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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