Csa3G228370 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G228370
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-dependent RNA helicase, putative; contains IPR001650 (Helicase, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
LocationChr3 : 14936280 .. 14941185 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCGTAAGCTGTTTTATCTTGTTGTAGCTTAAGAGGAATCTATTAGCACTGTTCACCCCACAGCTTGACATTTGTTTTCTTTAATGGATGTTAAACTCTTGATTCAGATCAGATTTTTACTACATTGTGGCTAAAGGCTGCAAATATGATATCCCTTCTCAATTGCCTATTGTGAGCTATCTTGTTTGCCATTAAGTCAATTTCCAACTCTTATATCGTGAAAATATTCAGAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGTAATTTTCTTTAACATGAGATACTCATAGCTTTTTTGTCTCCGCTTCTGAAGTCAAACCATAAGGTCTATAGTTCTGCTGATAAATGTCTAATTATTTTATTATGCAGGAAAGATTAAATGAGCATATTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGTACGTTATTGTTGTTCTCTGCATTTTTATTTTTATTGTTTTTTATTTTCTTAACTTCAAAACTGTTTCGCATAACAGGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTGTAACATACAGGGGCTACTTCTAAGTATTTTGTTTCTTCTTGTTGATTTTTTAATTCTTAATTTTATTTTGTTCAAGACTATTCTAGGGATTTTATCAAATGGAGGACTAAAAGTTCACTTGGTTGTGGCCAATGAAATTATGCCAATACAAAACAATCAATAGTATGTTAGAACACTTGCTAACAAGAACAAGATCTTAATTTATTTTTTTTAAATGGAGACAAGCCTCTTTATTAATAATAATAAATGAGACTAATGCTCAAAGTACAAGAGAATTATACAAAGGGCAAAAAAAAGAGGACAAAATCGTCCAAACAAACTAAGACAGATGAACTTGGGCAATACAAAAGAGGAAAACGACCAAAAAAAAAAAACAATCACAAAGAACAAGCTAAAAAAGTGAAAACCAAACAGGAAAAAAAAAAGCTAAACTGAACCAAAATGAAGAAAATTGAAAACAAAGCATAACGAAAAATCTCTCATAAGGAAAACATTCAAAACTAGAGACTTGCAAGAAGATGCAACCGGATGATGCCACAATCATTGACTAAGAGGGAGTAAGACTTATCAATCTTTTATTAAACCAAGATGATGCCACAATCATTGACTAAGGGCAGCAGATCCTTAGGCAATTCTGAGGGGACTTGGAAGGGAAGAGCGCCAGCTTCATCAAATAAAATAGAGAGGTCTGCCCCTTCAATTTCTTCATTACTCTTGAGATCAAAATCATTTAAGTTGCCCAAGGACTCCTCACTACTGACACTAAATGGAGAATCCAAGGTCTTGGTGGGCAGCTTGTCAATGGCAGCACGACAAGGGGAGCCTCGCATCAAAGTAACTTTAGTGCTAAAGTTGGGAAGTTTTGAGTATTTGAACTACTTGGTATGAGAAACCGAGTTTACAGACCTGGTGAGGCAATTAGAAGACTGAATTTTGGAGCAGCAAACCTCCAAAAGATCTGGATTGTTTGCTGAAATAGATGGCTCTGAATGGTGCATCCTAGAGGGGGCTGAAATTGGGATTTTGAGGTCACATCCTCCATTCAGCTCAGACTTTAATAAGGCTATCCATAAGTCATTGAAAGATGTATGTTTCCGGATATAATGCTTCAGAATTTTCGGAGCTTGAACTTGGAGAGATTTACCACCTTTTGTTGATTTTGGCTTGTTACAGGAAACCAGAGACTGAAGGGAGAGAATGATTTGTGGAGGCTGGGAGGCTGGATTTGGTAGTAGCCGTTGGTTGGAAGAACAGTTATCTTTAATTATTTTGGAGGATATATAATAATTCTGCATGATAGTAATTAAAGATGCTTTTCCTTTTTTCTCTCTCTACTTACGACTCCAGTAGCTGAATTAATGGGATTTTGATTATTACCTGTGGGCCCCAATTGCCTTTTAGGACAGCTATGTCCCTTAGGAGTGTCATTAAATAAAGGTGAAGGCTGTTCAGGTTCCTGCCTAATGGAGTTGGCTGCCACCTGTTTACCGGAACCATTCATCTTCTCCGGCGCCGGTGAGGTGGCCGGAAAATGTTGTAGAGGTTGATGGACTTCTATTCCTCGGCAAGGTTGCAAAAACTGATTTTGGGACATTAAGTACAGGTGGGAAGGAGAAGAGATCACAGCCCTCATCAAACAAGGTTTCTCATATTCTTAGCCGATCAATGGAGTTTTGGTAGACATCATGCACACTAGGGGATTTTTTCTATTCTTAGCCGATCAATAGGGAAGCTCCTCAGTCTTTCTCTCCTCTTTACAACCGTTTCTATTGTTCCTCTCATTCCAAAGACACCACAAAATATTACACACTGTGGTGTGTAATATACATTTTGACAATCCTCAATTGTCTCTCTACAAACCTCAGCATTGACAAAGCAAAAGCCAAAGCCATACGCCTTAAAGAAACAACTCCAAACAGCACCTGCAAAATCACATTGCCATAGTTGGTTAATATTATTTAGTCTGCACAAAATACGTATTTTGTGCAGTTAAATTTTAATTAAACTATATAAATTATGATCATTAGGCCAATTTGGCTCTTTCTTGTTGCTCTGGCATACGTCTGTTTGAATCGTTTTCAAAATTCTATATGTTCTCCTAGTTTTTGTTAGGTCTAAATATATTCACACGAAAGTCCTATATGTTTTAGACTTCCTTGAGGACTGGTCCACCACATACTGAGTGGTAAGGGTGACATGGGTTGGGTTCGTTTGAGGGCATTTTTTGGACCAACCTAAATTTTTCAGGTTGATTGAGTTGGCTACCCAAATGACCTGAATAGGACCTCCACTCAACCCAACCTTGGGTTGGGTTATTTATTTTCTCCTTTCCTTTTTAAGTGCATTCTTTTATTAACTTAGAATACTTAATTTTGTCTACAACACATACTAATAACTAAAATTTCACAAAAGTCAAAGGTTAAATATCAAAATCCAAGATATCTATTATAAACTTTAAACAAATGTTATAACAATATATATGAGTTATGATATTTTATAAGTTAATTTATATATTTTAATAATATTAGGAATTCGGGTCGAGGTTGGGTCAACTCGAATTTGTAAAAGTGTAACTAAAACCCAATCCTTACAATTTGGATTGGGTAGTTCGAGTTGTTTGAGCGCTTGGGTCATTTGAACACCCTTGATGAATAGTAACTTATCATTTATTAAATATACCTTTGTACATATTAGGGTGAGAGAAGAAATTTAGCAGTAGTAAAATGTCCACAGAAGCTGAATGCTATTTCTTCTGTTTTGCCTATTCTTTTACTTCTGAACTTGATTCGACCCAGTTTTCCTTTGCTCTTTAATTCTATGCATCTATGGTGTTTATGTTGATGGTTATGAAATGTCTTTAATCTTGGAATTCAGGTTATAATAGCCACAAATATTGCGGAGACCAGTATTACGATCGATGATGTGGTTTATGTGATAGACAGTGGAAGACATAAAGAGAACCGTTACAATCCTCAAAAGGTGACACTTTTTTGTATTACCATAACCGTAATTGAGTTGGGTGGTGGTGACATTCCGTTTATATATATTTTTCACAAATTTTTGTCTGCATTTGCGATTTTGGGAAGTCTATGGGGACTTTTATTTTGGTGGCTTGGAGTTTTTTTTAAAAGGAAACAGTTCATAGTACGATAGAATTATACTATGAGCAAACAAACCAAGGATCAGGAGGTACTCCCGGATATCTCAACTAGATTGACACCCCTTAGCACCCTCATCATATCCATACATGATATAAAGATAAAACAACTAACAATGTCCGTGTGCAGGGCTAAAAACAGCCAATACAACCCAAAAAAAACATAAGAAACTACTTCTAACAAGACTAGAAATAAAAAATACAGCGAGACAGAAAGATTCTGAAACTATTAGAAAGGCTATGAGCCAATTCTGCAGCGTCCGCAAGGAGGGAAGATAAAGACCTGCCAGTTTTGTAAGATAGAGAAGTCTTTAAATTGTGTACTTAGGGAGAACCACAAAGAGGCATTCAGGCATGTGAACTCGTATCTATCAGACCAAGAGGAGGTTTTATTGTGGAAGACTCTCAAACCACAGTTCCACCAAAATTGCCTTGACAGCACTGCACTAAAGCAAGGAAGCATTTTTCATCATAACCGGACCAATAAGTTTATGTCTAACATTATTCTTGCACTGATAAGAAAAGGAAACTGAAGAGGTGATTTTAAAGAGGAAAGAGAAAGATCCAGCAGTGTCAACTGTTTTGCCCAATGAAATTCCAAGAGTCATTCACGAGTTTAATGAACCGACAGCTGGGTCATTTTCAAGAATTTGAGAGTTAACTTTGTTGCAAACGAAAATTTAAATGACAGCCTAATTCTTTATCATCCAAGACAGCCCAACAGTCACATGGCCTCATTACAACTGTTCCAAGTTCCTCTGTTGGCAGAGAGCTATCCCATGTTTCTTCTGAGCCGTTAGTACCTCCCATTCTTGATGTTTCAAATCACTGCAACCCCTTGTCCGGAAAAAATTCAAAACTTCTTATTTCCCTTCCTCCCTTTTGA

mRNA sequence

ATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATATTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGTTATAATAGCCACAAATATTGCGGAGACCAGTATTACGATCGATGATGTGGTTTATGTGATAGACAGTGGAAGACATAAAGAGAACCGTTACAATCCTCAAAAGCCTAATTCTTTATCATCCAAGACAGCCCAACAGTCACATGGCCTCATTACAACTGTTCCAAGTTCCTCTGTTGGCAGAGAGCTATCCCATGTTTCTTCTGAGCCGTTAGTACCTCCCATTCTTGATGTTTCAAATCACTGCAACCCCTTGTCCGGAAAAAATTCAAAACTTCTTATTTCCCTTCCTCCCTTTTGA

Coding sequence (CDS)

ATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATATTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGTTATAATAGCCACAAATATTGCGGAGACCAGTATTACGATCGATGATGTGGTTTATGTGATAGACAGTGGAAGACATAAAGAGAACCGTTACAATCCTCAAAAGCCTAATTCTTTATCATCCAAGACAGCCCAACAGTCACATGGCCTCATTACAACTGTTCCAAGTTCCTCTGTTGGCAGAGAGCTATCCCATGTTTCTTCTGAGCCGTTAGTACCTCCCATTCTTGATGTTTCAAATCACTGCAACCCCTTGTCCGGAAAAAATTCAAAACTTCTTATTTCCCTTCCTCCCTTTTGA

Protein sequence

MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLISLPPF*
Homology
[Close]
BLAST of Csa3G228370 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.0e-67
Identity = 128/186 (68.82%), Postives = 151/186 (81.18%), Query Frame = 1 

Query: 16   VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLE 75
            VN RRGKKNL+L+GWGDD LLSE C NP+Y S  Y SYS+ TQ+NL+RLNE  IDY+LLE
Sbjct: 844  VNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDRIDYELLE 903

Query: 76   DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 135
            +L+ H+D T +EGAIL+FLPGV+EI++L D LAASY+F G A+DW+LPLHSSIAS++Q+K
Sbjct: 904  ELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRK 963

Query: 136  VFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LSSKT 195
            VFLRPP G+RKVI ATNIAETSITIDDVVYVIDSG+HKENRYNPQK  S      +S   
Sbjct: 964  VFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQAN 1023

[Close]
BLAST of Csa3G228370 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.7e-55
Identity = 109/166 (65.66%), Postives = 128/166 (77.11%), Query Frame = 1 

Query: 16  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLE 75
           VN  RGKKNL+L+GWGD  L+SE   N  Y+S  Y             +   ++DYDLLE
Sbjct: 824 VNVPRGKKNLMLAGWGDSYLVSEDSLNTSYDSIKY-------------IASAVVDYDLLE 883

Query: 76  DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 135
           +L+ H+D T +EGAILVFLPG+SEI++L +RLAASY+F G + DW+LPLHSSIAST+QKK
Sbjct: 884 ELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLPLHSSIASTEQKK 943

Query: 136 VFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK 182
           VFLRPP GIRKVIIATNIAETSITI+DVVYVIDSG+HKENRYNP K
Sbjct: 944 VFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHK 976

[Close]
BLAST of Csa3G228370 vs. Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 1 

Query: 50  YQSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFD----EGAILVFLPGVSEIHLLYD 109
           YQ YS  TQ  +  +N H I+ DL+ +L++++DK+      EGA+L+FLPG++ I  LYD
Sbjct: 825 YQKYSSRTQHAILYMNPHKINLDLILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYD 884

Query: 110 RLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVY 169
            L++  +F  +    ++ LHS +++ DQ   F+ PP G+RK+++ATNIAET ITI DVV+
Sbjct: 885 LLSSDRRFYSERYQ-VIALHSVLSTQDQAAAFMFPPPGVRKIVLATNIAETGITIPDVVF 944

Query: 170 VIDSGRHKENRYN 179
           VID+GR KEN+Y+
Sbjct: 945 VIDTGRTKENKYH 956

[Close]
BLAST of Csa3G228370 vs. Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-26
Identity = 67/153 (43.79%), Postives = 100/153 (65.36%), Query Frame = 1 

Query: 50  YQSYSELTQKNLERLNEHIIDYDLLEDL---VIHVDKTFDEGAILVFLPGVSEIHLLYDR 109
           Y+  S+   K +  ++   ++ +L+E L   ++    ++  GAILVFLPG++EI +LY++
Sbjct: 807 YKGVSKSVIKTMSIMDFEKVNLELIEALLEWIVDGKHSYPPGAILVFLPGLAEIKMLYEQ 866

Query: 110 LAASYQFGGQASDW--ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVV 169
           L ++  F  + S+   I PLHSS++S +Q+ VF++PP G+ K+II+TNIAETSITIDDVV
Sbjct: 867 LQSNSLFNNRRSNRCVIHPLHSSLSSEEQQAVFVKPPAGVTKIIISTNIAETSITIDDVV 926

Query: 170 YVIDSGRHKENRYNPQK-PNSLSSKTAQQSHGL 197
           YVIDSG+ KE RY+  K   SL      Q++ L
Sbjct: 927 YVIDSGKMKEKRYDASKGMESLEDTFVSQANAL 959

[Close]
BLAST of Csa3G228370 vs. Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-25
Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 1 

Query: 50  YQSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFD----EGAILVFLPGVSEIHLLYD 109
           YQ YS  T+  +  +N + I+ DL+ +L++ +D + +    EGA+L+FLPG+++I  LYD
Sbjct: 820 YQRYSSQTRHAVLYMNPNKINLDLILELLVFLDISPEYRNVEGAVLIFLPGLADIQQLYD 879

Query: 110 RLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVY 169
            L++  +F  +    ++ LHS ++S DQ + F+ PP G RK+++ATNIAET ITI DVV+
Sbjct: 880 ILSSDKRFHDRRRYKLIALHSILSSQDQAEAFILPPAGTRKIVLATNIAETGITIPDVVF 939

Query: 170 VIDSGRHKENRYNPQKPNS------LSSKTAQQSHG 196
           VID+GR KENRY+     S      +S  +A Q  G
Sbjct: 940 VIDAGRTKENRYHESSQMSSLVETFISKASALQRQG 975

[Close]
BLAST of Csa3G228370 vs. TrEMBL
Match: A0A0A0L9F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228370 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 9.2e-137
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 

Query: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60
           MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN
Sbjct: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60

Query: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120
           LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW
Sbjct: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120

Query: 121 ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ 180
           ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ
Sbjct: 121 ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ 180

Query: 181 KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI 240
           KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI
Sbjct: 181 KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI 240

Query: 241 SLPPF 246
           SLPPF
Sbjct: 241 SLPPF 245

[Close]
BLAST of Csa3G228370 vs. TrEMBL
Match: B9SSN0_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.9e-71
Identity = 134/169 (79.29%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 13   NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 72
            + PVN RRGKKNL+LSGWGDD+LLSE   NP++ S  YQSYSE TQKNL+RL+E IIDYD
Sbjct: 839  SGPVNDRRGKKNLVLSGWGDDSLLSEEIINPHFVSSNYQSYSEQTQKNLKRLDEDIIDYD 898

Query: 73   LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 132
            LLEDL+ HVD+T+ EGAILVFLPG+SEIH+L DRL ASY+FGG +S+W+LPLHSSIASTD
Sbjct: 899  LLEDLIFHVDQTYGEGAILVFLPGMSEIHMLLDRLVASYRFGGPSSNWVLPLHSSIASTD 958

Query: 133  QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK 182
            QKKVFLRPP  IRKVIIATNIAETSITIDDVVYVID G+HKENRYNPQK
Sbjct: 959  QKKVFLRPPENIRKVIIATNIAETSITIDDVVYVIDCGKHKENRYNPQK 1007

[Close]
BLAST of Csa3G228370 vs. TrEMBL
Match: A0A061E4D8_THECC (ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.7e-70
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1 

Query: 12  INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDY 71
           ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE +IDY
Sbjct: 373 MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 432

Query: 72  DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 131
           DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 433 DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 492

Query: 132 DQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------L 191
           +QKKVFL PP GIRKVIIATN+AETSITIDDVVYVID G+HKENRYNPQK  S      +
Sbjct: 493 EQKKVFLNPPNGIRKVIIATNVAETSITIDDVVYVIDCGKHKENRYNPQKKLSSMVEDWI 552

Query: 192 SSKTAQQSHG 196
           S   A+Q  G
Sbjct: 553 SRANAKQRRG 562

[Close]
BLAST of Csa3G228370 vs. TrEMBL
Match: A0A061DXK0_THECC (ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.7e-70
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1 

Query: 12   INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDY 71
            ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE +IDY
Sbjct: 839  MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 898

Query: 72   DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 131
            DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 899  DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 958

Query: 132  DQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------L 191
            +QKKVFL PP GIRKVIIATN+AETSITIDDVVYVID G+HKENRYNPQK  S      +
Sbjct: 959  EQKKVFLNPPNGIRKVIIATNVAETSITIDDVVYVIDCGKHKENRYNPQKKLSSMVEDWI 1018

Query: 192  SSKTAQQSHG 196
            S   A+Q  G
Sbjct: 1019 SRANAKQRRG 1028

[Close]
BLAST of Csa3G228370 vs. TrEMBL
Match: A0A061DYH6_THECC (ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.7e-70
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1 

Query: 12   INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDY 71
            ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE +IDY
Sbjct: 839  MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 898

Query: 72   DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 131
            DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 899  DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 958

Query: 132  DQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------L 191
            +QKKVFL PP GIRKVIIATN+AETSITIDDVVYVID G+HKENRYNPQK  S      +
Sbjct: 959  EQKKVFLNPPNGIRKVIIATNVAETSITIDDVVYVIDCGKHKENRYNPQKKLSSMVEDWI 1018

Query: 192  SSKTAQQSHG 196
            S   A+Q  G
Sbjct: 1019 SRANAKQRRG 1028

[Close]
BLAST of Csa3G228370 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 258.1 bits (658), Expect = 5.6e-69
Identity = 128/186 (68.82%), Postives = 151/186 (81.18%), Query Frame = 1 

Query: 16   VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLE 75
            VN RRGKKNL+L+GWGDD LLSE C NP+Y S  Y SYS+ TQ+NL+RLNE  IDY+LLE
Sbjct: 844  VNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDRIDYELLE 903

Query: 76   DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 135
            +L+ H+D T +EGAIL+FLPGV+EI++L D LAASY+F G A+DW+LPLHSSIAS++Q+K
Sbjct: 904  ELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRK 963

Query: 136  VFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LSSKT 195
            VFLRPP G+RKVI ATNIAETSITIDDVVYVIDSG+HKENRYNPQK  S      +S   
Sbjct: 964  VFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQAN 1023

[Close]
BLAST of Csa3G228370 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-56
Identity = 109/166 (65.66%), Postives = 128/166 (77.11%), Query Frame = 1 

Query: 16  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLE 75
           VN  RGKKNL+L+GWGD  L+SE   N  Y+S  Y             +   ++DYDLLE
Sbjct: 824 VNVPRGKKNLMLAGWGDSYLVSEDSLNTSYDSIKY-------------IASAVVDYDLLE 883

Query: 76  DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 135
           +L+ H+D T +EGAILVFLPG+SEI++L +RLAASY+F G + DW+LPLHSSIAST+QKK
Sbjct: 884 ELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLPLHSSIASTEQKK 943

Query: 136 VFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK 182
           VFLRPP GIRKVIIATNIAETSITI+DVVYVIDSG+HKENRYNP K
Sbjct: 944 VFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHK 976

[Close]
BLAST of Csa3G228370 vs. TAIR10
Match: AT2G35920.1 (AT2G35920.1 RNA helicase family protein)

HSP 1 Score: 114.8 bits (286), Expect = 7.7e-26
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 1 

Query: 50  YQSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAA 109
           Y+SYS  T+ +LE  +   ID DL+E  + H+ +    GAILVFL G  EI  L +++  
Sbjct: 466 YKSYSSATRNSLEAWSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKINM 525

Query: 110 SYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDS 169
           +   G  +   +LPLH S+ + +Q+++F RPP   RK+++ATNIAE+SITIDDVVYV+D 
Sbjct: 526 NNFLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDC 585

Query: 170 GRHKENRYNPQK------PNSLSSKTAQQSHG 196
           G+ KE  Y+         P+ +S  +A Q  G
Sbjct: 586 GKAKETSYDALNKVACLLPSWISKASAHQRRG 617

[Close]
BLAST of Csa3G228370 vs. TAIR10
Match: AT2G30800.1 (AT2G30800.1 helicase in vascular tissue and tapetum)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 1 

Query: 35  LLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFL 94
           ++ E   N   NS   Q   +L  K +  +N   +D  L++ L+  +    ++GAILVFL
Sbjct: 502 IIREHADNSQSNS---QQGQQLLDKYMATINPEQVDVSLIQQLMRKICGDSEDGAILVFL 561

Query: 95  PGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIA 154
           PG  +I+    RL  +  F   A   I+ LHS + + +QKKVF RPP G RK+++ATNIA
Sbjct: 562 PGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNRPPPGCRKIVLATNIA 621

Query: 155 ETSITIDDVVYVIDSGRHKENRYNP 180
           E+++TIDDVVYVIDSGR KE  Y+P
Sbjct: 622 ESAVTIDDVVYVIDSGRMKEKSYDP 643

[Close]
BLAST of Csa3G228370 vs. TAIR10
Match: AT1G06670.1 (AT1G06670.1 nuclear DEIH-boxhelicase)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-24
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 1 

Query: 51  QSYSELTQKNLERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAAS 110
           Q   +L  K +  +    +D  L+  L+  +     +GAILVFLPG  EI    ++L   
Sbjct: 539 QQAQDLLDKYMATIKPEEVDVGLIVKLMKKICSDSKDGAILVFLPGWEEISKTKEKLLDD 598

Query: 111 YQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSG 170
             F   A   IL LHS + + +QKKVF RPP G RK+++ATNIAE+++TIDDVVYVIDSG
Sbjct: 599 RFFAHSAKFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSG 658

Query: 171 RHKENRYNP 180
           R KE  Y+P
Sbjct: 659 RMKEKSYDP 667

[Close]
BLAST of Csa3G228370 vs. NCBI nr
Match: gi|700202476|gb|KGN57609.1| (hypothetical protein Csa_3G228370 [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 1.3e-136
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 

Query: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60
           MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN
Sbjct: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60

Query: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120
           LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW
Sbjct: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120

Query: 121 ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ 180
           ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ
Sbjct: 121 ILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQ 180

Query: 181 KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI 240
           KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI
Sbjct: 181 KPNSLSSKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPPILDVSNHCNPLSGKNSKLLI 240

Query: 241 SLPPF 246
           SLPPF
Sbjct: 241 SLPPF 245

[Close]
BLAST of Csa3G228370 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 1.2e-92
Identity = 179/214 (83.64%), Postives = 184/214 (85.98%), Query Frame = 1 

Query: 13  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 72
           NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD
Sbjct: 711 NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 770

Query: 73  LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 132
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 771 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 830

Query: 133 QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LS 192
           QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK  S      +S
Sbjct: 831 QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKKLSSMVEDWIS 890

Query: 193 SKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPP 221
              A+Q  G    V   +     +H   E L+ P
Sbjct: 891 QANARQRRGRAGRVRPGTCFCLYTHHRYEKLMRP 924

[Close]
BLAST of Csa3G228370 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 1.2e-92
Identity = 179/214 (83.64%), Postives = 184/214 (85.98%), Query Frame = 1 

Query: 13   NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 72
            NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD
Sbjct: 865  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 924

Query: 73   LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 132
            LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 925  LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 984

Query: 133  QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LS 192
            QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK  S      +S
Sbjct: 985  QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKKLSSMVEDWIS 1044

Query: 193  SKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPP 221
               A+Q  G    V   +     +H   E L+ P
Sbjct: 1045 QANARQRRGRAGRVRPGTCFCLYTHHRYEKLMRP 1078

[Close]
BLAST of Csa3G228370 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 342.4 bits (877), Expect = 6.4e-91
Identity = 175/214 (81.78%), Postives = 182/214 (85.05%), Query Frame = 1 

Query: 13  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 72
           +APVNYRRGKKNLILSGWGDD LLSEACTNPYYNSDCYQSYSELT KNLERLNEH+IDYD
Sbjct: 711 SAPVNYRRGKKNLILSGWGDDVLLSEACTNPYYNSDCYQSYSELTHKNLERLNEHVIDYD 770

Query: 73  LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 132
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 771 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 830

Query: 133 QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LS 192
           QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK  S      +S
Sbjct: 831 QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKKLSSMVEDWIS 890

Query: 193 SKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPP 221
              A+Q  G    V   +     +H   E L+ P
Sbjct: 891 QANARQRRGRAGRVRPGTCFCLYTHHRYEKLMRP 924

[Close]
BLAST of Csa3G228370 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 342.4 bits (877), Expect = 6.4e-91
Identity = 175/214 (81.78%), Postives = 182/214 (85.05%), Query Frame = 1 

Query: 13   NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 72
            +APVNYRRGKKNLILSGWGDD LLSEACTNPYYNSDCYQSYSELT KNLERLNEH+IDYD
Sbjct: 865  SAPVNYRRGKKNLILSGWGDDVLLSEACTNPYYNSDCYQSYSELTHKNLERLNEHVIDYD 924

Query: 73   LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 132
            LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 925  LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 984

Query: 133  QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKPNS------LS 192
            QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQK  S      +S
Sbjct: 985  QKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKENRYNPQKKLSSMVEDWIS 1044

Query: 193  SKTAQQSHGLITTVPSSSVGRELSHVSSEPLVPP 221
               A+Q  G    V   +     +H   E L+ P
Sbjct: 1045 QANARQRRGRAGRVRPGTCFCLYTHHRYEKLMRP 1078

The following BLAST results are available for this feature:
BLAST of Csa3G228370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH7_ARATH1.0e-6768.82DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH5.7e-5565.66DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
DHX29_MOUSE1.5e-2645.86ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1[more]
DHX57_HUMAN5.5e-2643.79Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2[more]
DHX29_XENLA1.6e-2541.67ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1[more]
BLAST of Csa3G228370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9F8_CUCSA9.2e-137100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228370 PE=4 SV=1[more]
B9SSN0_RICCO3.9e-7179.29ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV... [more]
A0A061E4D8_THECC9.7e-7072.11ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061DXK0_THECC9.7e-7072.11ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061DYH6_THECC9.7e-7072.11ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 ... [more]
BLAST of Csa3G228370 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58060.15.6e-6968.82 RNA helicase family protein[more]
AT1G58050.13.2e-5665.66 RNA helicase family protein[more]
AT2G35920.17.7e-2641.45 RNA helicase family protein[more]
AT2G30800.11.7e-2543.45 helicase in vascular tissue and tapetum[more]
AT1G06670.14.2e-2445.74 nuclear DEIH-boxhelicase[more]
BLAST of Csa3G228370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202476|gb|KGN57609.1|1.3e-136100.00hypothetical protein Csa_3G228370 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|1.2e-9283.64PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|1.2e-9283.64PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|6.4e-9181.78PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|6.4e-9181.78PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G228370.1Csa3G228370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 82..172
score: 7.
IPR001650Helicase, C-terminalPROFILEPS51194HELICASE_CTERcoord: 73..245
score: 9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 59..170
score: 8.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 59..182
score: 2.57
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 63..181
score: 6.0
NoneNo IPR availablePANTHERPTHR18934:SF145ATP-DEPENDENT RNA HELICASE DHX57-RELATEDcoord: 63..181
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G228370MELO3C019422Melon (DHL92) v3.5.1cumeB166
Csa3G228370Cucsa.032800Cucumber (Gy14) v1cgycuB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G228370Watermelon (97103) v2cuwmbB215
Csa3G228370Wax gourdcuwgoB283
Csa3G228370Cucurbita maxima (Rimu)cmacuB320
Csa3G228370Cucurbita maxima (Rimu)cmacuB697
Csa3G228370Cucurbita moschata (Rifu)cmocuB307
Csa3G228370Cucurbita moschata (Rifu)cmocuB687
Csa3G228370Watermelon (Charleston Gray)cuwcgB230
Csa3G228370Watermelon (97103) v1cuwmB243
Csa3G228370Cucurbita pepo (Zucchini)cpecuB205
Csa3G228370Cucurbita pepo (Zucchini)cpecuB389
Csa3G228370Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G228370Cucumber (Gy14) v2cgybcuB109
Csa3G228370Melon (DHL92) v3.6.1cumedB238
Csa3G228370Silver-seed gourdcarcuB0043
Csa3G228370Silver-seed gourdcarcuB0675