Cucsa.032800 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032800
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent RNA helicase, putative
Locationscaffold00429 : 2028649 .. 2029704 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCGTAAGCTGTTTTATCCTGTTGTAGCTTAAGAGGAATCTATTAGCACTGTTCACCCAACATCTTGACATTTGTTTTCTTTAATGGATGTTAAACTCTTGATTCAGATCAGATTTTTACTACATTGTGGCTAAAGGCTGCAAATATGATATCCCTTCTCAATTGCCTATTGTGAGCTATCTTGTTTGCCATTAAGTCAATTTCCAACTCTTATATCGTGAAAATATTCAGAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGTAATTTTCTTTAACATGAGATACTCATAGCTTTTTTGTCTCCGCTTCTGAAGTCAAACCATAAGGTCTATAGTTCTGCTGATAAATGTCTAATTATTTTATTATGCAGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGTACGTTATTGTTGTTCTCTGCATTTGTATTTTTATTGTTTTTtATTTTCTTAACTTAAAAACTGTTTCGCATAACAGGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTGTAACATACAGGGGCTACTTCTAAGTATTTTGTTTCTTCTCGTTGATTTTTTAATTCTTAATTTTATTTTGTTCAAGACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA

mRNA sequence

ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA

Coding sequence (CDS)

ATGCTATATTTACAAATACCCACCCCTATTCTTTATGGAAGTGTTGTATATGTTTTATTTAGCAGACACATATTTCATTATATGCCGCAGATTGTCAGTTCATATCAAATGCTGATCAATGCTCCAGTCAATTATCGAAGAGGAAAGAAAAACCTCATATTATCCGGATGGGGTGACGATGCTTTACTTTCTGAAGCCTGTACAAATCCATACTACAATTCAGATTGTTATCAATCATACAGTGAGTTGACACAGAAAAATCTGGAAAGATTAAATGAGCATGTTATTGATTATGATCTTCTCGAAGATTTAGTGATTCATGTGGATAAAACTTTTGATGAGGGAGCCATACTTGTTTTCTTGCCAGGAGTGTCAGAAATTCACTTGTTGTATGATAGATTAGCTGCTTCTTACCAATTTGGTGGACAGGCTTCTGATTGGATTCTTCCTTTGCATTCGTCCATTGCATCTACTGATCAAAAAAAGGTGTTTTTACGGCCTCCATATGGCATCCGCAAGGCAAGCTTTACTATTCTAGGGATTTTATCAAATGGAGGACTAAAA

Protein sequence

MLYLQIPTPILYGSVVYVLFSRHIFHYMPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRKASFTILGILSNGGLK
Homology
[Close]
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.9e-48
Identity = 90/131 (68.70%), Postives = 112/131 (85.50%), Query Frame = 1 

Query: 43  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLE 102
           VN RRGKKNL+L+GWGDD LLSE C NP+Y S  Y SYS+ TQ+NL+RLNE  IDY+LLE
Sbjct: 844 VNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDRIDYELLE 903

Query: 103 DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 162
           +L+ H+D T +EGAIL+FLPGV+EI++L D LAASY+F G A+DW+LPLHSSIAS++Q+K
Sbjct: 904 ELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRK 963

Query: 163 VFLRPPYGIRK 174
           VFLRPP G+RK
Sbjct: 964 VFLRPPKGLRK 974

[Close]
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 43  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLE 102
           VN  RGKKNL+L+GWGD  L+SE   N  Y+S  Y             +   V+DYDLLE
Sbjct: 824 VNVPRGKKNLMLAGWGDSYLVSEDSLNTSYDSIKY-------------IASAVVDYDLLE 883

Query: 103 DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 162
           +L+ H+D T +EGAILVFLPG+SEI++L +RLAASY+F G + DW+LPLHSSIAST+QKK
Sbjct: 884 ELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLPLHSSIASTEQKK 941

Query: 163 VFLRPPYGIRK 174
           VFLRPP GIRK
Sbjct: 944 VFLRPPKGIRK 941

[Close]
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1 

Query: 72  YNSDCYQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLY 131
           YN  C   YS+ T+  +  L+E  + ++LLE L++H+      GAILVFLPG + I  L 
Sbjct: 611 YNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAILVFLPGWNLIFALM 670

Query: 132 DRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
             L  +  FG  +   ILP HS I   +Q+KVF   P G+ K
Sbjct: 671 KFLQNTNIFGDTSQYQILPCHSQIPRDEQRKVFEPVPEGVTK 712

[Close]
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 37/101 (36.63%), Postives = 64/101 (63.37%), Query Frame = 1 

Query: 77  YQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFD----EGAILVFLPGVSEIHLLYD 136
           YQ YS  T+  +  +N + I+ DL+ +L++ +D + +    EGA+L+FLPG+++I  LYD
Sbjct: 820 YQRYSSQTRHAVLYMNPNKINLDLILELLVFLDISPEYRNVEGAVLIFLPGLADIQQLYD 879

Query: 137 RLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
            L++  +F  +    ++ LHS ++S DQ + F+ PP G RK
Sbjct: 880 ILSSDKRFHDRRRYKLIALHSILSSQDQAEAFILPPAGTRK 920

[Close]
BLAST of Cucsa.032800 vs. Swiss-Prot
Match: DEXH1_ARATH (DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana GN=At2g35920 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-11
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 77  YQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAA 136
           Y+SYS  T+ +LE  +   ID DL+E  + H+ +    GAILVFL G  EI  L +++  
Sbjct: 466 YKSYSSATRNSLEAWSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKINM 525

Query: 137 SYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
           +   G  +   +LPLH S+ + +Q+++F RPP   RK
Sbjct: 526 NNFLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRK 562

[Close]
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A0A0L9F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228370 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.9e-78
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 28  MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 87
           MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN
Sbjct: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60

Query: 88  LERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 147
           LERLNEH+IDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW
Sbjct: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120

Query: 148 ILPLHSSIASTDQKKVFLRPPYGIRK 174
           ILPLHSSIASTDQKKVFLRPPYGIRK
Sbjct: 121 ILPLHSSIASTDQKKVFLRPPYGIRK 146

[Close]
BLAST of Cucsa.032800 vs. TrEMBL
Match: B9SSN0_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 100/134 (74.63%), Postives = 117/134 (87.31%), Query Frame = 1 

Query: 40  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYD 99
           + PVN RRGKKNL+LSGWGDD+LLSE   NP++ S  YQSYSE TQKNL+RL+E +IDYD
Sbjct: 839 SGPVNDRRGKKNLVLSGWGDDSLLSEEIINPHFVSSNYQSYSEQTQKNLKRLDEDIIDYD 898

Query: 100 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 159
           LLEDL+ HVD+T+ EGAILVFLPG+SEIH+L DRL ASY+FGG +S+W+LPLHSSIASTD
Sbjct: 899 LLEDLIFHVDQTYGEGAILVFLPGMSEIHMLLDRLVASYRFGGPSSNWVLPLHSSIASTD 958

Query: 160 QKKVFLRPPYGIRK 174
           QKKVFLRPP  IRK
Sbjct: 959 QKKVFLRPPENIRK 972

[Close]
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061DYH6_THECC (ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1 

Query: 39  INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDY 98
           ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE VIDY
Sbjct: 839 MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 898

Query: 99  DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 158
           DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 899 DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 958

Query: 159 DQKKVFLRPPYGIRK 174
           +QKKVFL PP GIRK
Sbjct: 959 EQKKVFLNPPNGIRK 973

[Close]
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061E4D8_THECC (ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1 

Query: 39  INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDY 98
           ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE VIDY
Sbjct: 373 MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 432

Query: 99  DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 158
           DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 433 DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 492

Query: 159 DQKKVFLRPPYGIRK 174
           +QKKVFL PP GIRK
Sbjct: 493 EQKKVFLNPPNGIRK 507

[Close]
BLAST of Cucsa.032800 vs. TrEMBL
Match: A0A061DXK0_THECC (ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-50
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 1 

Query: 39  INAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDY 98
           ++ PVN RRGKKNL+LS WGDD+LLSE   NP+Y+S  YQSYSE TQKNL+RLNE VIDY
Sbjct: 839 MSGPVNNRRGKKNLVLSAWGDDSLLSEDYVNPHYDSSSYQSYSEQTQKNLKRLNEDVIDY 898

Query: 99  DLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIAST 158
           DLLE LV HVD+T  EGAIL+FLPGV EI+ L DRLAASYQFGG +SDW+LPLHSSIAS+
Sbjct: 899 DLLEYLVCHVDETCGEGAILIFLPGVVEIYTLLDRLAASYQFGGPSSDWLLPLHSSIASS 958

Query: 159 DQKKVFLRPPYGIRK 174
           +QKKVFL PP GIRK
Sbjct: 959 EQKKVFLNPPNGIRK 973

[Close]
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 90/131 (68.70%), Postives = 112/131 (85.50%), Query Frame = 1 

Query: 43  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLE 102
           VN RRGKKNL+L+GWGDD LLSE C NP+Y S  Y SYS+ TQ+NL+RLNE  IDY+LLE
Sbjct: 844 VNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQTQQNLKRLNEDRIDYELLE 903

Query: 103 DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 162
           +L+ H+D T +EGAIL+FLPGV+EI++L D LAASY+F G A+DW+LPLHSSIAS++Q+K
Sbjct: 904 ELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRK 963

Query: 163 VFLRPPYGIRK 174
           VFLRPP G+RK
Sbjct: 964 VFLRPPKGLRK 974

[Close]
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-37
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 43  VNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLE 102
           VN  RGKKNL+L+GWGD  L+SE   N  Y+S  Y             +   V+DYDLLE
Sbjct: 824 VNVPRGKKNLMLAGWGDSYLVSEDSLNTSYDSIKY-------------IASAVVDYDLLE 883

Query: 103 DLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKK 162
           +L+ H+D T +EGAILVFLPG+SEI++L +RLAASY+F G + DW+LPLHSSIAST+QKK
Sbjct: 884 ELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLPLHSSIASTEQKK 941

Query: 163 VFLRPPYGIRK 174
           VFLRPP GIRK
Sbjct: 944 VFLRPPKGIRK 941

[Close]
BLAST of Cucsa.032800 vs. TAIR10
Match: AT2G35920.1 (AT2G35920.1 RNA helicase family protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 77  YQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAA 136
           Y+SYS  T+ +LE  +   ID DL+E  + H+ +    GAILVFL G  EI  L +++  
Sbjct: 466 YKSYSSATRNSLEAWSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKINM 525

Query: 137 SYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
           +   G  +   +LPLH S+ + +Q+++F RPP   RK
Sbjct: 526 NNFLGDSSKFLVLPLHGSMPTVNQREIFDRPPPNKRK 562

[Close]
BLAST of Cucsa.032800 vs. TAIR10
Match: AT2G30800.1 (AT2G30800.1 helicase in vascular tissue and tapetum)

HSP 1 Score: 64.7 bits (156), Expect = 7.0e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1 

Query: 62  LLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFL 121
           ++ E   N   NS   Q   +L  K +  +N   +D  L++ L+  +    ++GAILVFL
Sbjct: 502 IIREHADNSQSNS---QQGQQLLDKYMATINPEQVDVSLIQQLMRKICGDSEDGAILVFL 561

Query: 122 PGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
           PG  +I+    RL  +  F   A   I+ LHS + + +QKKVF RPP G RK
Sbjct: 562 PGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNRPPPGCRK 610

[Close]
BLAST of Cucsa.032800 vs. TAIR10
Match: AT1G48650.2 (AT1G48650.2 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 37/113 (32.74%), Postives = 66/113 (58.41%), Query Frame = 1 

Query: 61  ALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYDLLEDLVIHVDKTFDEGAILVF 120
           +L+S A  +    +D ++ Y+  T+ +L   +   I ++L+E+++ H+ K    GA+LVF
Sbjct: 526 SLISSAVEDALEAAD-FKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVF 585

Query: 121 LPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTDQKKVFLRPPYGIRK 174
           + G  +I+ L ++L A    G      +L  H S+AS++Q+ +F RPP GIRK
Sbjct: 586 MTGWDDINSLKNQLEAHSLLGDPNKVLLLACHGSMASSEQRLIFDRPPEGIRK 637

[Close]
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|700202476|gb|KGN57609.1| (hypothetical protein Csa_3G228370 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 2.8e-78
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 28  MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 87
           MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN
Sbjct: 1   MPQIVSSYQMLINAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKN 60

Query: 88  LERLNEHVIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 147
           LERLNEH+IDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW
Sbjct: 61  LERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDW 120

Query: 148 ILPLHSSIASTDQKKVFLRPPYGIRK 174
           ILPLHSSIASTDQKKVFLRPPYGIRK
Sbjct: 121 ILPLHSSIASTDQKKVFLRPPYGIRK 146

[Close]
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 40  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYD 99
           NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEH+IDYD
Sbjct: 711 NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 770

Query: 100 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 159
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 771 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 830

Query: 160 QKKVFLRPPYGIRK 174
           QKKVFLRPPYGIRK
Sbjct: 831 QKKVFLRPPYGIRK 844

[Close]
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 40  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYD 99
           NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEH+IDYD
Sbjct: 865 NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHIIDYD 924

Query: 100 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 159
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 925 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 984

Query: 160 QKKVFLRPPYGIRK 174
           QKKVFLRPPYGIRK
Sbjct: 985 QKKVFLRPPYGIRK 998

[Close]
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 4.8e-70
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 40  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYD 99
           +APVNYRRGKKNLILSGWGDD LLSEACTNPYYNSDCYQSYSELT KNLERLNEHVIDYD
Sbjct: 711 SAPVNYRRGKKNLILSGWGDDVLLSEACTNPYYNSDCYQSYSELTHKNLERLNEHVIDYD 770

Query: 100 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 159
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 771 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 830

Query: 160 QKKVFLRPPYGIRK 174
           QKKVFLRPPYGIRK
Sbjct: 831 QKKVFLRPPYGIRK 844

[Close]
BLAST of Cucsa.032800 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 4.8e-70
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 40  NAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYSELTQKNLERLNEHVIDYD 99
           +APVNYRRGKKNLILSGWGDD LLSEACTNPYYNSDCYQSYSELT KNLERLNEHVIDYD
Sbjct: 865 SAPVNYRRGKKNLILSGWGDDVLLSEACTNPYYNSDCYQSYSELTHKNLERLNEHVIDYD 924

Query: 100 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 159
           LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD
Sbjct: 925 LLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFGGQASDWILPLHSSIASTD 984

Query: 160 QKKVFLRPPYGIRK 174
           QKKVFLRPPYGIRK
Sbjct: 985 QKKVFLRPPYGIRK 998

The following BLAST results are available for this feature:
BLAST of Cucsa.032800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH7_ARATH3.9e-4868.70DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH4.5e-3659.54DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
MLE_DROME2.3e-1139.22Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2[more]
DHX29_XENLA2.3e-1136.63ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1[more]
DEXH1_ARATH8.6e-1138.14DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana GN=At2g35920 P... [more]
BLAST of Cucsa.032800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9F8_CUCSA1.9e-7899.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228370 PE=4 SV=1[more]
B9SSN0_RICCO1.6e-5174.63ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV... [more]
A0A061DYH6_THECC2.9e-5074.81ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061E4D8_THECC2.9e-5074.81ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061DXK0_THECC2.9e-5074.81ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 ... [more]
BLAST of Cucsa.032800 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58060.12.2e-4968.70 RNA helicase family protein[more]
AT1G58050.12.5e-3759.54 RNA helicase family protein[more]
AT2G35920.14.8e-1238.14 RNA helicase family protein[more]
AT2G30800.17.0e-1135.71 helicase in vascular tissue and tapetum[more]
AT1G48650.22.6e-1032.74 DEA(D/H)-box RNA helicase family protein[more]
BLAST of Cucsa.032800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202476|gb|KGN57609.1|2.8e-7899.32hypothetical protein Csa_3G228370 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|1.5e-7199.25PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|778680313|ref|XP_011651287.1|1.5e-7199.25PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|4.8e-7097.76PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|4.8e-7097.76PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032800.1Cucsa.032800.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 90..173
score: 1.3
NoneNo IPR availablePANTHERPTHR18934:SF145ATP-DEPENDENT RNA HELICASE DHX57-RELATEDcoord: 90..173
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.032800Csa3G228370Cucumber (Chinese Long) v2cgycuB003
Cucsa.032800MELO3C019422Melon (DHL92) v3.5.1cgymeB002
Cucsa.032800CSPI03G19210Wild cucumber (PI 183967)cgycpiB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032800Cucumber (Chinese Long) v3cgycucB006
Cucsa.032800Watermelon (97103) v2cgywmbB003
Cucsa.032800Wax gourdcgywgoB003
Cucsa.032800Cucurbita maxima (Rimu)cgycmaB0007
Cucsa.032800Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.032800Cucurbita moschata (Rifu)cgycmoB0006
Cucsa.032800Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.032800Watermelon (Charleston Gray)cgywcgB003
Cucsa.032800Watermelon (97103) v1cgywmB002
Cucsa.032800Cucurbita pepo (Zucchini)cgycpeB0005
Cucsa.032800Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.032800Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.032800Melon (DHL92) v3.6.1cgymedB002
Cucsa.032800Silver-seed gourdcarcgyB0048
Cucsa.032800Silver-seed gourdcarcgyB0730