CSPI06G11240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G11240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionLOB domain protein
LocationChr6 : 9889838 .. 9892318 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTTCCATCTTCTTCCTCATCGCTCCCTACTTTTCCTTTCTCTTTTCTTCTACTTCTCAAGAAAACCTCTGACTCGTATTTCCAAAACCCAATTTTAGCTCAAAATTGGATAGTTATTAAAACTATCTCAATTTGCATTCTCTTAATTAAAGAGAAATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGTTAGTAAGTCAAATTATGATTTTCTTTAGTTACACATTGGTTTTGTTTAATTTCTCTCTTCTTTTGAATATTTCTTTTTGCTTTCTCCCTAATGTTTGGTAATGTAATTAATTAAGCTAGTTTCTTTTTAATTTAAGGAAGTTTGGATTATTAATTATAGAGGTGAGAGAGACTTCAATTTTTGGCTTAACCTGCTGAAATAAACTCAAATTAGTGGTTAAAATAATTAGATTATTTGTCACAAAGAGGAGCCAACCATTCTATATTCTCATATTATCCCTACTAACCACACACAAATTGACAAAACAGCCCAATAACTTAAAAAGAGGAAAAAAATAAAGTAGGGTTTTATAAAATATATAAAATTACATGATATTTTTCCATTGGTGTTCCATCGTTTTCTCTTGCTTTTTTCACTTTGATAATAAGCCACGACAAGATTAAACATCTCCTTCCCTCTCTTTCACACACTAGTTAGTAATTTAATACACTAATTATGAGTTACCATGATATTAACTTTCCAAGGCAAAAGAAAAAATAAAGTTTTCAACTTTCCAAGAACTACAAAACCGACACACTTAACCAATTAAAACTATAACGATAGGACACTAATGATCGTAACTCATTTCATAATTCTTCGAGTTATAAAAGAAAAAAACAAATTATTATTTGAAACTGGATAATTAAATAAGATGGCAATATGTTATGTATCTTCTATTTATTTTCGGTTATAGTGGTTAATTACGGTTGAGGAGCCCACTTTTTTCTTAAAAAAAAAAAAAAAGAAAAAAAGAAAAGAAAAAGAAAGTGTGTCTCTACTTTTTGAAAAAGCAAACCCTAAAATTGGTTGGAAGACCAATTCAGGAGATTCCTTAGCGTATGAAAGAGTAAAGAGGGATTGTTTAATTTTGTACTAACTAATTAATCAAACCATACTTTAATTAACCATACCCTTTGGTTAATTAACACTTCATGAAACCAAAGTATAATTTAATTATGTTTTCATTAATTATTTAATCTTCTCAACTTTAACCCTCCATTACCCTTATAGCTTTCCGTTAAATTACAATATCAACCTGAACTTTTTTATTCCTTCTTTGGTAGCTCCAAAAGAAAGGTAAGATTCTAAATGTTTTTTTTTTTTCAAAAAAAATTATTTTACTATCCTAAATCAATATTATTTGTCTCATTCTAACGTCATAATGACATCTAAAATCCTTTCTTCATATAAAAGTAATGTAAATAGAGTTTGGTATATACATTTCTTTTAAATTTTTTAATAACTACTAATAAAATATATTTGGTTGCTCAATATATTACTAGTAGAGAAAATGGATGCAAATAAGTAGTATAATATAATGTTGTTGAAACATCTTCACTTGTTATTTAGTGACAACAATATTCAAGTACATACGAGAATATTGCTATACAAACTCTATAGTGTTATGAGATAACCTAGAGAAGATTCTTAATAAGCTCCTCCAAATTGTTTCTCTTTAGATTTACTCTTCTTTAGTTTAATATTCGATACTATATTGGTAAACATTTCTACCTCAAATAACCTAATTGATAATAGAAAGTTAGAGTAATCATATATTTAATAAAAATGATAAGGTTTCATCGTACTATTTTCAATAAAGTATATTCCCAATTAACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAGCTAATTAATTTTAAGCCTTTAGGCGTGCGTTCTTTTGCCTTCACCTCTTTTATTTTATTTTTTCTTCTTCTTATTTTTCCTAATTATCATTATAATGTGCTTTTCTTTATCATTATAATGGGGCTTGCTTTATTGTATGTTT

mRNA sequence

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG

Coding sequence (CDS)

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG
Homology
[Close]
BLAST of CSPI06G11240 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-60
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of CSPI06G11240 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-45
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 1 

Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]
BLAST of CSPI06G11240 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 1 

Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]
BLAST of CSPI06G11240 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1 

Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS------------------YNPTAGHSPETASPSSKMNIPAPNKSYFS 157
           +S                    PT    P TA P      P+P+   FS
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHP------PSPSSCVFS 204

[Close]
BLAST of CSPI06G11240 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1 

Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

[Close]
BLAST of CSPI06G11240 vs. TrEMBL
Match: A0A0A0KBA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139130 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]
BLAST of CSPI06G11240 vs. TrEMBL
Match: K4D8L7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-66
Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]
BLAST of CSPI06G11240 vs. TrEMBL
Match: M1AGH3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008649 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 138/172 (80.23%), Postives = 146/172 (84.88%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDNLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++ E+LWS
Sbjct: 121 RQFSSMSGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIEESLWS 170

[Close]
BLAST of CSPI06G11240 vs. TrEMBL
Match: A5BKW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-64
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG ++SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQTQLA+ QAEVV MRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
             F SS+ N  A  SPE AS +S++      KS+FSMDM VDH +M E+LWS
Sbjct: 121 NQFTSSTSN-QATDSPENASHTSRLAASPQTKSFFSMDMVVDHANMVESLWS 169

[Close]
BLAST of CSPI06G11240 vs. TrEMBL
Match: A0A164XU11_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016829 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.4e-64
Identity = 133/172 (77.33%), Postives = 143/172 (83.14%), Query Frame = 1 

Query: 5   SGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 64
           SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ+LP
Sbjct: 4   SGRKQGVA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQDLP 63

Query: 65  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 124
           E QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ QLA AQAEVVHM+MR + 
Sbjct: 64  EHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLAQAQAEVVHMQMRQYS 123

Query: 125 SSSYNPTAGHSPETASPSSK----MNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           SS  NP   +SPE  SP+SK     +     +S FSMDM VDH +MGE+LWS
Sbjct: 124 SSVANPNNDNSPENVSPTSKHMMMQSSQTSTRSLFSMDMVVDHTNMGESLWS 174

[Close]
BLAST of CSPI06G11240 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-61
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of CSPI06G11240 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 1 

Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]
BLAST of CSPI06G11240 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-45
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 1 

Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]
BLAST of CSPI06G11240 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 161.0 bits (406), Expect = 6.6e-40
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1 

Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS------------------YNPTAGHSPETASPSSKMNIPAPNKSYFS 157
           +S                    PT    P TA P      P+P+   FS
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHP------PSPSSCVFS 204

[Close]
BLAST of CSPI06G11240 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-38
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1 

Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

[Close]
BLAST of CSPI06G11240 vs. NCBI nr
Match: gi|449464650|ref|XP_004150042.1| (PREDICTED: LOB domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 2.2e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]
BLAST of CSPI06G11240 vs. NCBI nr
Match: gi|460410747|ref|XP_004250781.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum lycopersicum])

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-66
Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]
BLAST of CSPI06G11240 vs. NCBI nr
Match: gi|970061133|ref|XP_015057347.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum pennellii])

HSP 1 Score: 258.5 bits (659), Expect = 8.6e-66
Identity = 138/172 (80.23%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAP+FPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPFFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]
BLAST of CSPI06G11240 vs. NCBI nr
Match: gi|565397323|ref|XP_006364248.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum tuberosum])

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 138/172 (80.23%), Postives = 146/172 (84.88%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDNLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++ E+LWS
Sbjct: 121 RQFSSMSGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIEESLWS 170

[Close]
BLAST of CSPI06G11240 vs. NCBI nr
Match: gi|1009130308|ref|XP_015882228.1| (PREDICTED: LOB domain-containing protein 4-like [Ziziphus jujuba])

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65
Identity = 138/172 (80.23%), Postives = 148/172 (86.05%), Query Frame = 1 

Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG ++SPCAACKLLRRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AISPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAV SMVYEANARVRDPVYGCVGAISSLQQQID LQTQLA+AQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVISMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMD-MVDHDSMGETLWS 172
           R  PS+S    AG+SPE  SPS+K    +  KS+F MD MVD  +MGE+LWS
Sbjct: 121 RQCPSTSNQ--AGNSPENGSPSTKHMASSQTKSFFGMDMMVDQANMGESLWS 168

The following BLAST results are available for this feature:
BLAST of CSPI06G11240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD4_ARATH4.1e-6072.57LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD3_ARATH2.2e-4557.06LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1[more]
LBD12_ARATH5.4e-4472.41LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD15_ARATH1.2e-3850.89LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
LBD1_ARATH4.9e-3767.89LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
BLAST of CSPI06G11240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBA8_CUCSA1.5e-93100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139130 PE=4 SV=1[more]
K4D8L7_SOLLC2.1e-6680.81Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1AGH3_SOLTU1.3e-6580.23Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008649 PE=4 SV=1[more]
A5BKW9_VITVI4.3e-6479.65Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=... [more]
A0A164XU11_DAUCA7.4e-6477.33Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016829 PE=4 SV=1[more]
BLAST of CSPI06G11240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31320.12.3e-6172.57 LOB domain-containing protein 4[more]
AT1G16530.11.2e-4657.06 ASYMMETRIC LEAVES 2-like 9[more]
AT2G30130.13.1e-4572.41 Lateral organ boundaries (LOB) domain family protein[more]
AT2G40470.16.6e-4050.89 LOB domain-containing protein 15[more]
AT1G07900.12.8e-3867.89 LOB domain-containing protein 1[more]
BLAST of CSPI06G11240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464650|ref|XP_004150042.1|2.2e-93100.00PREDICTED: LOB domain-containing protein 4 [Cucumis sativus][more]
gi|460410747|ref|XP_004250781.1|3.0e-6680.81PREDICTED: LOB domain-containing protein 4-like [Solanum lycopersicum][more]
gi|970061133|ref|XP_015057347.1|8.6e-6680.23PREDICTED: LOB domain-containing protein 4-like [Solanum pennellii][more]
gi|565397323|ref|XP_006364248.1|1.9e-6580.23PREDICTED: LOB domain-containing protein 4-like [Solanum tuberosum][more]
gi|1009130308|ref|XP_015882228.1|2.5e-6580.23PREDICTED: LOB domain-containing protein 4-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044036 cell wall macromolecule metabolic process
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0010014 meristem initiation
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0010089 xylem development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G11240.1CSPI06G11240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 15..112
score: 2.6
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 14..115
score: 2
NoneNo IPR availableunknownCoilCoilcoord: 94..114
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 1..171
score: 1.2E
NoneNo IPR availablePANTHERPTHR31301:SF15LOB DOMAIN-CONTAINING PROTEIN 4coord: 1..171
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G11240Cla005507Watermelon (97103) v1cpiwmB461
CSPI06G11240Cla013469Watermelon (97103) v1cpiwmB544
CSPI06G11240Csa6G139130Cucumber (Chinese Long) v2cpicuB314
CSPI06G11240Csa7G237840Cucumber (Chinese Long) v2cpicuB321
CSPI06G11240MELO3C012624Melon (DHL92) v3.5.1cpimeB456
CSPI06G11240ClCG02G018540Watermelon (Charleston Gray)cpiwcgB472
CSPI06G11240ClCG09G022590Watermelon (Charleston Gray)cpiwcgB439
CSPI06G11240Lsi11G016180Bottle gourd (USVL1VR-Ls)cpilsiB429
CSPI06G11240Lsi10G015250Bottle gourd (USVL1VR-Ls)cpilsiB409
CSPI06G11240MELO3C012624.2Melon (DHL92) v3.6.1cpimedB449
CSPI06G11240CsaV3_7G022740Cucumber (Chinese Long) v3cpicucB376
CSPI06G11240CsaV3_6G013670Cucumber (Chinese Long) v3cpicucB364
CSPI06G11240Cla97C02G044430Watermelon (97103) v2cpiwmbB465
CSPI06G11240Cla97C09G184130Watermelon (97103) v2cpiwmbB535
CSPI06G11240Bhi10G000748Wax gourdcpiwgoB602
CSPI06G11240Bhi05G001748Wax gourdcpiwgoB567
CSPI06G11240Cucsa.118370Cucumber (Gy14) v1cgycpiB156
CSPI06G11240Cucsa.239660Cucumber (Gy14) v1cgycpiB356
CSPI06G11240CmaCh02G000240Cucurbita maxima (Rimu)cmacpiB645
CSPI06G11240CmoCh02G000230Cucurbita moschata (Rifu)cmocpiB636
CSPI06G11240CmoCh11G020550Cucurbita moschata (Rifu)cmocpiB129
CSPI06G11240Cp4.1LG05g15670Cucurbita pepo (Zucchini)cpecpiB753
CSPI06G11240Cp4.1LG04g02270Cucurbita pepo (Zucchini)cpecpiB690
CSPI06G11240CsGy7G010110Cucumber (Gy14) v2cgybcpiB329
CSPI06G11240CsGy6G011360Cucumber (Gy14) v2cgybcpiB288
CSPI06G11240Carg04675Silver-seed gourdcarcpiB0427
CSPI06G11240Carg13654Silver-seed gourdcarcpiB0033
CSPI06G11240Carg15667Silver-seed gourdcarcpiB0566
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI06G11240CSPI07G10760Wild cucumber (PI 183967)cpicpiB190
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G11240Cucurbita maxima (Rimu)cmacpiB140
CSPI06G11240Cucurbita maxima (Rimu)cmacpiB528
CSPI06G11240Cucurbita maxima (Rimu)cmacpiB570
CSPI06G11240Cucurbita maxima (Rimu)cmacpiB628
CSPI06G11240Cucurbita moschata (Rifu)cmocpiB521
CSPI06G11240Cucurbita moschata (Rifu)cmocpiB558
CSPI06G11240Cucurbita moschata (Rifu)cmocpiB620
CSPI06G11240Melon (DHL92) v3.5.1cpimeB420
CSPI06G11240Cucurbita pepo (Zucchini)cpecpiB252
CSPI06G11240Cucurbita pepo (Zucchini)cpecpiB284
CSPI06G11240Cucurbita pepo (Zucchini)cpecpiB765
CSPI06G11240Melon (DHL92) v3.6.1cpimedB433
CSPI06G11240Silver-seed gourdcarcpiB0029
CSPI06G11240Silver-seed gourdcarcpiB0370