CSPI06G11240.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G11240.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LOB domain protein
Location	Chr6 : 9889838 .. 9892318 (-)
Sequence length	522

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTTCCATCTTCTTCCTCATCGCTCCCTACTTTTCCTTTCTCTTTTCTTCTACTTCTCAAGAAAACCTCTGACTCGTATTTCCAAAACCCAATTTTAGCTCAAAATTGGATAGTTATTAAAACTATCTCAATTTGCATTCTCTTAATTAAAGAGAAATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGTTAGTAAGTCAAATTATGATTTTCTTTAGTTACACATTGGTTTTGTTTAATTTCTCTCTTCTTTTGAATATTTCTTTTTGCTTTCTCCCTAATGTTTGGTAATGTAATTAATTAAGCTAGTTTCTTTTTAATTTAAGGAAGTTTGGATTATTAATTATAGAGGTGAGAGAGACTTCAATTTTTGGCTTAACCTGCTGAAATAAACTCAAATTAGTGGTTAAAATAATTAGATTATTTGTCACAAAGAGGAGCCAACCATTCTATATTCTCATATTATCCCTACTAACCACACACAAATTGACAAAACAGCCCAATAACTTAAAAAGAGGAAAAAAATAAAGTAGGGTTTTATAAAATATATAAAATTACATGATATTTTTCCATTGGTGTTCCATCGTTTTCTCTTGCTTTTTTCACTTTGATAATAAGCCACGACAAGATTAAACATCTCCTTCCCTCTCTTTCACACACTAGTTAGTAATTTAATACACTAATTATGAGTTACCATGATATTAACTTTCCAAGGCAAAAGAAAAAATAAAGTTTTCAACTTTCCAAGAACTACAAAACCGACACACTTAACCAATTAAAACTATAACGATAGGACACTAATGATCGTAACTCATTTCATAATTCTTCGAGTTATAAAAGAAAAAAACAAATTATTATTTGAAACTGGATAATTAAATAAGATGGCAATATGTTATGTATCTTCTATTTATTTTCGGTTATAGTGGTTAATTACGGTTGAGGAGCCCACTTTTTTCTTAAAAAAAAAAAAAAAGAAAAAAAGAAAAGAAAAAGAAAGTGTGTCTCTACTTTTTGAAAAAGCAAACCCTAAAATTGGTTGGAAGACCAATTCAGGAGATTCCTTAGCGTATGAAAGAGTAAAGAGGGATTGTTTAATTTTGTACTAACTAATTAATCAAACCATACTTTAATTAACCATACCCTTTGGTTAATTAACACTTCATGAAACCAAAGTATAATTTAATTATGTTTTCATTAATTATTTAATCTTCTCAACTTTAACCCTCCATTACCCTTATAGCTTTCCGTTAAATTACAATATCAACCTGAACTTTTTTATTCCTTCTTTGGTAGCTCCAAAAGAAAGGTAAGATTCTAAATGTTTTTTTTTTTTCAAAAAAAATTATTTTACTATCCTAAATCAATATTATTTGTCTCATTCTAACGTCATAATGACATCTAAAATCCTTTCTTCATATAAAAGTAATGTAAATAGAGTTTGGTATATACATTTCTTTTAAATTTTTTAATAACTACTAATAAAATATATTTGGTTGCTCAATATATTACTAGTAGAGAAAATGGATGCAAATAAGTAGTATAATATAATGTTGTTGAAACATCTTCACTTGTTATTTAGTGACAACAATATTCAAGTACATACGAGAATATTGCTATACAAACTCTATAGTGTTATGAGATAACCTAGAGAAGATTCTTAATAAGCTCCTCCAAATTGTTTCTCTTTAGATTTACTCTTCTTTAGTTTAATATTCGATACTATATTGGTAAACATTTCTACCTCAAATAACCTAATTGATAATAGAAAGTTAGAGTAATCATATATTTAATAAAAATGATAAGGTTTCATCGTACTATTTTCAATAAAGTATATTCCCAATTAACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAGCTAATTAATTTTAAGCCTTTAGGCGTGCGTTCTTTTGCCTTCACCTCTTTTATTTTATTTTTTCTTCTTCTTATTTTTCCTAATTATCATTATAATGTGCTTTTCTTTATCATTATAATGGGGCTTGCTTTATTGTATGTTT

mRNA sequence

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG

Coding sequence (CDS)

ATGAAGGAGATTAGTGGAAGAAAACAAGGTACATCTCTTTCACCATGTGCAGCTTGCAAGCTTCTCCGTCGTAGATGTGCTCAAGATTGTGTTTTCGCCCCTTACTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGCTACAGGAGCTACCAGAACAACAACGAAGCGATGCAGTAAGTTCGATGGTGTATGAAGCAAACGCAAGAGTACGAGATCCCGTTTACGGTTGCGTTGGAGCCATATCATCGTTACAACAACAGATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCAGAGGTGGTTCACATGCGGATGCGCCACTTCCCGTCATCCTCTTACAACCCAACGGCGGGCCACTCACCGGAAACCGCCTCACCTTCCAGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAGCATGGGGGAGACCTTGTGGTCGTCTTGCTAG

Homology

[Close]

BLAST of CSPI06G11240.1 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-60
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CSPI06G11240.1 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-45
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 1


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CSPI06G11240.1 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 1


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of CSPI06G11240.1 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS------------------YNPTAGHSPETASPSSKMNIPAPNKSYFS 157
           +S                    PT    P TA P      P+P+   FS
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHP------PSPSSCVFS 204

[Close]

BLAST of CSPI06G11240.1 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

[Close]

BLAST of CSPI06G11240.1 vs. TrEMBL
Match: A0A0A0KBA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139130 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CSPI06G11240.1 vs. TrEMBL
Match: K4D8L7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-66
Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]

BLAST of CSPI06G11240.1 vs. TrEMBL
Match: M1AGH3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008649 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 138/172 (80.23%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDNLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++ E+LWS
Sbjct: 121 RQFSSMSGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIEESLWS 170

[Close]

BLAST of CSPI06G11240.1 vs. TrEMBL
Match: A5BKW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-64
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG ++SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQTQLA+ QAEVV MRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
             F SS+ N  A  SPE AS +S++      KS+FSMDM VDH +M E+LWS
Sbjct: 121 NQFTSSTSN-QATDSPENASHTSRLAASPQTKSFFSMDMVVDHANMVESLWS 169

[Close]

BLAST of CSPI06G11240.1 vs. TrEMBL
Match: A0A164XU11_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016829 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.4e-64
Identity = 133/172 (77.33%), Postives = 143/172 (83.14%), Query Frame = 1


Query: 5   SGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 64
           SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ+LP
Sbjct: 4   SGRKQGVA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQDLP 63

Query: 65  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 124
           E QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ QLA AQAEVVHM+MR + 
Sbjct: 64  EHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLAQAQAEVVHMQMRQYS 123

Query: 125 SSSYNPTAGHSPETASPSSK----MNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           SS  NP   +SPE  SP+SK     +     +S FSMDM VDH +MGE+LWS
Sbjct: 124 SSVANPNNDNSPENVSPTSKHMMMQSSQTSTRSLFSMDMVVDHTNMGESLWS 174

[Close]

BLAST of CSPI06G11240.1 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-61
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 R---HFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFS-MDMVDHDSMGETLWS 172
           R   +FP     P +  S  + SPSSK   P  NK  FS MD+VD  S+GE++WS
Sbjct: 121 RQSTNFPGHGLCPDSPSS--SGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CSPI06G11240.1 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 1


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R  H  
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSYNPTAGHSPETASPSSKMNIPAPNKSYFS---MDMVDHDSMGETLWS 172
                    H+      +S +  P+ NK ++S   M +   D  G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of CSPI06G11240.1 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-45
Identity = 84/116 (72.41%), Postives = 102/116 (87.93%), Query Frame = 1


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRHFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M++ P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of CSPI06G11240.1 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 161.0 bits (406), Expect = 6.6e-40
Identity = 86/169 (50.89%), Postives = 109/169 (64.50%), Query Frame = 1


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRH------FPS 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R        PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 132 SS------------------YNPTAGHSPETASPSSKMNIPAPNKSYFS 157
           +S                    PT    P TA P      P+P+   FS
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHP------PSPSSCVFS 204

[Close]

BLAST of CSPI06G11240.1 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-38
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ +
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQ 139

[Close]

BLAST of CSPI06G11240.1 vs. NCBI nr
Match: gi|449464650|ref|XP_004150042.1| (PREDICTED: LOB domain-containing protein 4 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 2.2e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 174
           RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of CSPI06G11240.1 vs. NCBI nr
Match: gi|460410747|ref|XP_004250781.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum lycopersicum])

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-66
Identity = 139/172 (80.81%), Postives = 147/172 (85.47%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]

BLAST of CSPI06G11240.1 vs. NCBI nr
Match: gi|970061133|ref|XP_015057347.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum pennellii])

HSP 1 Score: 258.5 bits (659), Expect = 8.6e-66
Identity = 138/172 (80.23%), Postives = 147/172 (85.47%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAP+FPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPFFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++GE+LWS
Sbjct: 121 RQFSSISGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIGESLWS 170

[Close]

BLAST of CSPI06G11240.1 vs. NCBI nr
Match: gi|565397323|ref|XP_006364248.1| (PREDICTED: LOB domain-containing protein 4-like [Solanum tuberosum])

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 138/172 (80.23%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG + SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQGAA-SPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID LQ+QLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDNLQSQLAIAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDM-VDHDSMGETLWS 172
           R F S S   TAG+SPE  SPSS+     P  S F+MDM VD  ++ E+LWS
Sbjct: 121 RQFSSMSGGGTAGNSPENVSPSSRHTQTQPTMSLFTMDMVVDQANIEESLWS 170

[Close]

BLAST of CSPI06G11240.1 vs. NCBI nr
Match: gi|1009130308|ref|XP_015882228.1| (PREDICTED: LOB domain-containing protein 4-like [Ziziphus jujuba])

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-65
Identity = 138/172 (80.23%), Postives = 148/172 (86.05%), Query Frame = 1


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG ++SPCAACKLLRRRCAQDCVFAPYFPADEP KFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AISPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAV SMVYEANARVRDPVYGCVGAISSLQQQID LQTQLA+AQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVISMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHMRM 120

Query: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMD-MVDHDSMGETLWS 172
           R  PS+S    AG+SPE  SPS+K    +  KS+F MD MVD  +MGE+LWS
Sbjct: 121 RQCPSTSNQ--AGNSPENGSPSTKHMASSQTKSFFGMDMMVDQANMGESLWS 168

The following BLAST results are available for this feature:

BLAST of CSPI06G11240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD4_ARATH	4.1e-60	72.57	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD3_ARATH	2.2e-45	57.06	LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1	[more]
LBD12_ARATH	5.4e-44	72.41	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD15_ARATH	1.2e-38	50.89	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]
LBD1_ARATH	4.9e-37	67.89	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]

BLAST of CSPI06G11240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBA8_CUCSA	1.5e-93	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139130 PE=4 SV=1	[more]
K4D8L7_SOLLC	2.1e-66	80.81	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1AGH3_SOLTU	1.3e-65	80.23	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008649 PE=4 SV=1	[more]
A5BKW9_VITVI	4.3e-64	79.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=...	[more]
A0A164XU11_DAUCA	7.4e-64	77.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016829 PE=4 SV=1	[more]

BLAST of CSPI06G11240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	2.3e-61	72.57	LOB domain-containing protein 4	[more]
AT1G16530.1	1.2e-46	57.06	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30130.1	3.1e-45	72.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	6.6e-40	50.89	LOB domain-containing protein 15	[more]
AT1G07900.1	2.8e-38	67.89	LOB domain-containing protein 1	[more]

BLAST of CSPI06G11240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464650\|ref\|XP_004150042.1\|	2.2e-93	100.00	PREDICTED: LOB domain-containing protein 4 [Cucumis sativus]	[more]
gi\|460410747\|ref\|XP_004250781.1\|	3.0e-66	80.81	PREDICTED: LOB domain-containing protein 4-like [Solanum lycopersicum]	[more]
gi\|970061133\|ref\|XP_015057347.1\|	8.6e-66	80.23	PREDICTED: LOB domain-containing protein 4-like [Solanum pennellii]	[more]
gi\|565397323\|ref\|XP_006364248.1\|	1.9e-65	80.23	PREDICTED: LOB domain-containing protein 4-like [Solanum tuberosum]	[more]
gi\|1009130308\|ref\|XP_015882228.1\|	2.5e-65	80.23	PREDICTED: LOB domain-containing protein 4-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044036	cell wall macromolecule metabolic process
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0010014	meristem initiation
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0010089	xylem development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI06G11240	CSPI06G11240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI06G11240.1	CSPI06G11240.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11240.1.utr3p1	CSPI06G11240.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11240.1.cds2	CSPI06G11240.1.cds2	CDS
CSPI06G11240.1.cds1	CSPI06G11240.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI06G11240.1.utr5p1	CSPI06G11240.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 15..112 score: 2.6
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 14..115 score: 2
None	No IPR available	unknown	Coil	Coil	coord: 94..114 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..171 score: 1.2E
None	No IPR available	PANTHER	PTHR31301:SF15	LOB DOMAIN-CONTAINING PROTEIN 4	coord: 1..171 score: 1.2E