CSPI06G11160 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAATATTAATAACCAAAGGGAAGGAGAGTAGAGGTAAAGGCAATTAGCCCAAATTTCTCTAACACTTCCAAACAATTCGCCCTTCCTTATCTTTGTTACGAAGAACGTCCGAAGAAACAACTAAACGATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGTCTCTTTTTTCAGATTCCCTCCCATTTCTTACCTTCTCAATCAATTCACTACCTTTCTTTCCCCTTCTTCATGTTTATACCTTTTGATTTATGTTTACTTTCATTTCTTTGAGATCCCTTCGCCCTTCACATGTTATTGCCTTTTTCCGCTTCGATTTCTGCTGTTTTTGTTCGTCCCTGAGGTTTTTGTTTTTTTTTTTTGATCAAATTCTGACTAGCATGCGTTTGCTTTGATTCCGTATCATTGCATGATCCAATGGATGAAGGATTAGGAAATTAGCGTTACTGATTCATTTTCGTTTTGCATATGTGTTAAATTGAATTGTTGGAATGGGTTTTTCTTTTTTAAATTATTTTTAATATGTTTGCGGTCTCTAAGTTTATGCTTGTTCTTTTCGTCTGGTTGTTTGTTAGTTCATCATATTTTCCATGGCTTGATTCTTTTTTATCAGGTGTATGTTTATATTCTTGTCACATCACTTTACGAACAAAATTATTTTTGATGCATGAATTGGTTTCGGAATTTAATTCCAGCGTGCCGTCTTTATAATCGTATTTTGAGTTTTGGAATGTATATTTCTTCTAGCTTTAAACAGGGGGGATTAGACAATTTGGTTTTAATGGTCTGTTTTAATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGTTTGCATTTGCCTCCTTTAATTACTTAAACTACAATAACTATATTTTCAATGGCCTTTTGTATATGTGGATAGCTTGTTTAATCTCCCCTCAAATGTGTCACTGTGCTTTCTCTGTTTAAGAATGGAATTTGGTGTGGAAATTTTTTACTTAGCACAGGATTCATTAGTACATTTTGGTAAGTAAACAATGAAGTTGGGTCAATTTTAGATTCCAACATTTTGGTAAGGTATGAAGTACATTTATAATAAAATATGAAGGAAGATCTAAGATTTACAATACTTAGCTAGGTAATGTCTTATAGTGAAGGTTTATAAAAGAAACCTAAATGCAATGAGTATATTTTCTAGTTGTTTCAAAATAACTAAGAATAGGAATTTGAAACAGAATTTCATGTAAAATAGTATTGTTAGTTTCACATACTTGGAAAATTAACTCCATGGTTCAAGTTCAAGTATCTGAATTTAAAATGTAAATAAATGTTTTCCCATGGTCTAATACAGTAATGCTTGAGTACCTGACAATTGATAGTTTGATAGACTTAGACAGCCACGTTACTTAAGTTGAAGTGTCCATGATTTGTAACTGTAAGTTTTCTCTAGTTGGCTTTCCATGGTCTTTCCTTTAACATCCATTATGTTATTATTTTCTGGAGTGGTGTTAAATATATCTTACTCTCCTTATGGCAATTAGTGAGTCAACAATTCTGAATTTCATCAAAATTCTTTTTTCTAGTCCCTGTGGTCAGCCATCTATGAACTCATATCGGATCAACGGGATCTGTCATTTCTTTTAGTTTTATGAGACTTAAAATTTGATATTGCCGTGTGCTTATTATAACAAGTTCTATCATACTCTGCTTTTTGCAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAAAAGCATTTATCTATCACCTCCTGAAATTCAGAAATTTTTAGTTTTTTGTTTTGTTGGTGCTTGATGAATGCATGAGCGGCATCTTTGCTTGTGTGTGGATAAATGGAAAATATTTGAGCCCAAACTTTAACTCTCTTATCAAATTACTCTTGTAATAGAGAGATTTCATGTCCTGTGTATCTCCATCTCTCAAGTTCAAGATTAAACCATTTGGTGTGCGTGGAAGGTGGAGTTTGTAAAATTTAGTCCCAAAGTCATCAATTTTTATTGGGGGGAATGGAAGCTTAATTATCTCTATGTTGTTTTACTTTATTTTCATAGATCCTCTCCTGTTTATGAACAGGGCTTTGTATCTCATTGGCACAAAGTGTTTGGATGTCCTTCACCAGGTGCGTTTCATACTCTTTCTTTCCTCTTATTATAATAGTGTGCCGCATGTGGATTGTTTGCTATTGCTTTTGTTTTCCCCTTTCAATTTTTGAGGAATGTAGGGCTTTGATAATTGTTTGTTTTTTTTAATTCTCAGTTTTCAGCAAAGTTTCAATAATTGTGTAGAAATTTTAAATCGACTATAAGAAGCGTCATTTCGGTTCTGGTTTACTCAAACAAAATCCAAAAAATTAGGTTTCCTATTTTATTTCAGTCCCACAATACACACAGTCCCTCGGCATCTTTGTGTGTTCTCTCTCACATAGTCGCATCCACCTTTGTCTCTAACACCAAGAAGCATAAAGATCACTCCCATTCAGAAGATGGTGTATTTTTTTTTCTTTCAAATTTTAAAAATATTTGTGTCACCCGCTGAAGAAGAGTGTGGCTATTCTCTCTATTCTTGTTATTTTTTTAAAAAATTATTATCAATAGATCACAAATTCAAGATTGGCCCGA ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAGAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA
BLAST of CSPI06G11160 vs. Swiss-Prot
Match: RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2) HSP 1 Score: 297.4 bits (760), Expect = 9.3e-80 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. Swiss-Prot
Match: RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2) HSP 1 Score: 297.0 bits (759), Expect = 1.2e-79 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. Swiss-Prot
Match: RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3) HSP 1 Score: 295.8 bits (756), Expect = 2.7e-79 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. Swiss-Prot
Match: RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2) HSP 1 Score: 294.7 bits (753), Expect = 6.1e-79 Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1
BLAST of CSPI06G11160 vs. Swiss-Prot
Match: RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3) HSP 1 Score: 292.4 bits (747), Expect = 3.0e-78 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1
BLAST of CSPI06G11160 vs. TrEMBL
Match: K3ZXQ0_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_031382mg PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TrEMBL
Match: C5XCV9_SORBI (Putative uncharacterized protein Sb02g024880 OS=Sorghum bicolor GN=Sb02g024880 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TrEMBL
Match: I1QP00_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TrEMBL
Match: F2CYA6_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TrEMBL
Match: A2Z1B6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31396 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.0e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TAIR10
Match: AT1G31340.1 (AT1G31340.1 related to ubiquitin 1) HSP 1 Score: 295.8 bits (756), Expect = 1.5e-80 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. TAIR10
Match: AT2G35635.1 (AT2G35635.1 ubiquitin 7) HSP 1 Score: 292.4 bits (747), Expect = 1.7e-79 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1
BLAST of CSPI06G11160 vs. TAIR10
Match: AT4G05050.1 (AT4G05050.1 ubiquitin 11) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1
BLAST of CSPI06G11160 vs. TAIR10
Match: AT4G05320.2 (AT4G05320.2 polyubiquitin 10) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1
BLAST of CSPI06G11160 vs. TAIR10
Match: AT4G02890.3 (AT4G02890.3 Ubiquitin family protein) HSP 1 Score: 244.2 bits (622), Expect = 5.3e-65 Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 1
BLAST of CSPI06G11160 vs. NCBI nr
Match: gi|449444274|ref|XP_004139900.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus]) HSP 1 Score: 300.8 bits (769), Expect = 1.4e-78 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1
BLAST of CSPI06G11160 vs. NCBI nr
Match: gi|659112734|ref|XP_008456305.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo]) HSP 1 Score: 298.9 bits (764), Expect = 5.1e-78 Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 1
BLAST of CSPI06G11160 vs. NCBI nr
Match: gi|242044708|ref|XP_002460225.1| (hypothetical protein SORBIDRAFT_02g024880 [Sorghum bicolor]) HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. NCBI nr
Match: gi|302393764|sp|P0C073.2|RUB1_DESAN (RecName: Full=Ubiquitin-NEDD8-like protein RUB1; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=NEDD8-like protein RUB1; AltName: Full=DaRUB1; AltName: Full=Ubiquitin-related protein 1; Flags: Precursor) HSP 1 Score: 297.0 bits (759), Expect = 2.0e-77 Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1
BLAST of CSPI06G11160 vs. NCBI nr
Match: gi|648174117|gb|AIC33058.1| (putative polyubiquitin [Panax ginseng]) HSP 1 Score: 297.0 bits (759), Expect = 2.0e-77 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |