CmoCh20G003010 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G003010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Polyubiquitin) (Ubiquitin 11)
LocationCmo_Chr20 : 1470560 .. 1472950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGATTTTGCCCAATTTTGTCGACACTTGGTTCTTTTGTTATCTTTGTCCATTTTTTTCTCTCTCGCTCTGTTTACTTAAAACGCGGGAAGGAAAGCGATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGTCTGTAGTTTCTGACTTCCTTTCCTTACTGCCTTTTATGAATTCATTTCTGGCTTACGTTTCTTTGGTTGAATTTCGGTTTTGATTTTCCTGTTGTTTAGTTTTTTTGCCTTTTGATTTGTGTTTAGTCTGATTGCTTGTTTAATTCATCGTTATTATCTTTGTTTTACGACTTGGAGATTCCTTCGCCGTTTGGAAGTTGCTTCATGCCGAGGAGATTTCATTTGTTTTCGTTCTTCTTTTTATCTATGTCTTCGTCGCAGAGGAGATGTTATGGAAACTCCGTTTTTTTTTTTTTCAATCAATTCTCACCAACATATGTTTGCATGAACCATTAGATAGGGGACTAAGAAAATTGGCGCCGATGGTTTCCTTTTTGCTTGTTTGTTGCGATTGTCAGTCAAATTAAGTTCGAGTAGGTTTTATTCCTTTCTGGACACATTTCCTTTATCGTATGTCTGTTTACCATTTAGCTTCTTCCATGGCGTTGTTTTGTTTTCTGGTGTATGTTTTTATTCATGCGGAATCACTTTCCCAACAAAAAAAATTCTGCAAGCTGTTGTGGTCCCCATAGATTTGATATGGCAATTTGATTCCATTGTGCCTTTCTTTATAAAAAAAAAAATCATATTTTGAATTCTGAATTACATTCTTTCTAGCTTCAACCAGGGCAATTAAGCAATTTGGTTTTATCGTTTTGTTTATATATAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGTCTGCATTTACCTTCTTCTCCATTACTTGAACTACAATGACTAAATCTTTCTATAGGCATTTGTATATGTGGATACCTTGTTGAATCTCCCTCAAACGCATCAGTATGCCTTCTCTGATTAAGAATAGAATTTGGCGTGGAGCTTTCCTACTTAGCATAGGGTTCATGAAGTTGGAGTGTTTTAGATTCCAGCATTTATTTTATGCATGACGTGTTATTTTAAAATGTATTGACATAGCACAATTCAAACAACGTAAGGACAGGTCCATTGCTAATTTGAGAAGATTTCAGTGGATTAGAAATCTGGTTCAAGGATATATCTCCACCCCCATATTTGGAGCTCAGATAATGGACATCTCTATTTAGTATTTTATTGTATGTTAACATGTTTCATGTTTTTGAAGTTTTATTCCAAGTAGTGAGATTTACACTTAGAGAATCTTGATATAGATTGACAGAAGATTTTGCATTATTGCTTATGTGCCTGAAAATTGATAGTTTGATAGAGTTAGTCACGTTACTTAAGTTTAATTTGCCCATGATTTCTAGGCTCTCTGGTTAGCCTTCCCGTGCTCTTTCTTCTAATATCTGTTTTATGCTATTATTTTCTGGGGTGGCGTTAAATATATCATAATACCCACGTAATGTGAATTAGTGAGTCAACTATTCTGAATTCCATCAAAATTCATTCTTCTATTTCGTATTGTCTTCTATGCACTCTGATTTGTTACCGACTAAACGGATTAATGGGATTTGCTTATTGCTTATGGAACTTAAAATTTGAAAGTGCACTCCGTTTTGCAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAAAAGCATTTATCTATCACATCCTGAAATTCTGAATTTTCAGTTTTATTTTGTTGGCGTGGATTAATGGAAAATATTTGAGCCCAAGCTTACTTTATTAATTACTCAGTTATTCCCAAAGTTCTTCAATTTTTCATTGGGGGAATCATGCTTAATTTATCCTGGTTGTTATACTTTCATTTTTATGGATCCTCTCCTGTCTATGACTCGCGCTTGTGATACAGGCGCGTGTTTGGTCGTCCTTCTCCAGGTGCGCTTCATACTCTTTTCTTTTCTCTTATTATAACGGATAGTACTAGAGATAGATAATTA

mRNA sequence

CGGATTTTGCCCAATTTTGTCGACACTTGGTTCTTTTGTTATCTTTGTCCATTTTTTTCTCTCTCGCTCTGTTTACTTAAAACGCGGGAAGGAAAGCGATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAAAAGCATTTATCTATCACATCCTGAAATTCTGAATTTTCAGTTTTATTTTGTTGGCGTGGATTAATGGAAAATATTTGAGCCCAAGCTTACTTTATTAATTACTCAGTTATTCCCAAAGTTCTTCAATTTTTCATTGGGGGAATCATGCTTAATTTATCCTGGTTGTTATACTTTCATTTTTATGGATCCTCTCCTGTCTATGACTCGCGCTTGTGATACAGGCGCGTGTTTGGTCGTCCTTCTCCAGGTGCGCTTCATACTCTTTTCTTTTCTCTTATTATAACGGATAGTACTAGAGATAGATAATTA

Coding sequence (CDS)

ATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGTAAACAATTGGAAGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAATCAACCCTTCACCTCGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACTGGGAAGGAAATTGAGATTGACATTGAGCCAACCGACACAATTGATCGTGTCAAGGAGAGGGTGGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTGATTTATGCCGGCAAACAGCTAGCAGATGACAAGACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTCGTGCTCGCCCTGAGGGGTGGTGGTTACCTGTAA
Homology
[Close]
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match: RUB1_DESAN (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.1e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match: RUB2_ORYSJ (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 7.9e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match: RUB1_ORYSJ (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 7.9e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match: RUB1_ARATH (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3)

HSP 1 Score: 294.3 bits (752), Expect = 7.9e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match: RUB2_ARATH (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3)

HSP 1 Score: 291.2 bits (744), Expect = 6.7e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. TrEMBL
Match: A0A0D3BRQ7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TrEMBL
Match: A0A078D4X0_BRANA (BnaC04g09440D protein OS=Brassica napus GN=BnaC04g09440D PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TrEMBL
Match: A0A078GZ20_BRANA (BnaA05g08370D protein OS=Brassica napus GN=BnaA05g08370D PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TrEMBL
Match: A0A068V111_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038582001 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-77
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TrEMBL
Match: A0A0J8E2F0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177290 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-77
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. TAIR10
Match: AT1G31340.1 (AT1G31340.1 related to ubiquitin 1)

HSP 1 Score: 294.3 bits (752), Expect = 4.5e-80
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. TAIR10
Match: AT2G35635.1 (AT2G35635.1 ubiquitin 7)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-79
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQLADDKTAKDY IEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 152

[Close]
BLAST of CmoCh20G003010 vs. TAIR10
Match: AT5G20620.1 (AT5G20620.1 ubiquitin 4)

HSP 1 Score: 243.4 bits (620), Expect = 9.0e-65
Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           +AGKQL D +T  DYNI+  S LHLVL LRGG +
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

[Close]
BLAST of CmoCh20G003010 vs. TAIR10
Match: AT5G03240.1 (AT5G03240.1 polyubiquitin 3)

HSP 1 Score: 243.4 bits (620), Expect = 9.0e-65
Identity = 124/154 (80.52%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGGY 155
           +AGKQL D +T  DYNI+  S LHLVL LRGG +
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

[Close]
BLAST of CmoCh20G003010 vs. TAIR10
Match: AT4G05320.2 (AT4G05320.2 polyubiquitin 10)

HSP 1 Score: 242.3 bits (617), Expect = 2.0e-64
Identity = 124/152 (81.58%), Postives = 135/152 (88.82%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 153
           +AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: gi|922474131|ref|XP_013635951.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica oleracea var. oleracea])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: gi|729342770|ref|XP_010540689.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: gi|674949186|emb|CDX84182.1| (BnaC04g09440D [Brassica napus])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: gi|923814276|ref|XP_013691855.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica napus])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

[Close]
BLAST of CmoCh20G003010 vs. NCBI nr
Match: gi|685305814|ref|XP_009143639.1| (PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica rapa])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 154
           YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGG 153

The following BLAST results are available for this feature:
BLAST of CmoCh20G003010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUB1_DESAN6.1e-79100.00Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2[more]
RUB2_ORYSJ7.9e-7999.34Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 S... [more]
RUB1_ORYSJ7.9e-7999.34Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 S... [more]
RUB1_ARATH7.9e-7999.34Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3[more]
RUB2_ARATH6.7e-7898.68Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3[more]
BLAST of CmoCh20G003010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D3BRQ7_BRAOL1.8e-7799.35Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078D4X0_BRANA1.8e-7799.35BnaC04g09440D protein OS=Brassica napus GN=BnaC04g09440D PE=4 SV=1[more]
A0A078GZ20_BRANA1.8e-7799.35BnaA05g08370D protein OS=Brassica napus GN=BnaA05g08370D PE=4 SV=1[more]
A0A068V111_COFCA5.2e-7798.69Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038582001 PE=4 SV=1[more]
A0A0J8E2F0_BETVU5.2e-7798.69Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177290 PE=4 S... [more]
BLAST of CmoCh20G003010 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31340.14.5e-8099.34 related to ubiquitin 1[more]
AT2G35635.13.8e-7998.68 ubiquitin 7[more]
AT5G20620.19.0e-6580.52 ubiquitin 4[more]
AT5G03240.19.0e-6580.52 polyubiquitin 3[more]
AT4G05320.22.0e-6481.58 polyubiquitin 10[more]
BLAST of CmoCh20G003010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922474131|ref|XP_013635951.1|2.5e-7799.35PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica oleracea var. oleracea][more]
gi|729342770|ref|XP_010540689.1|2.5e-7799.35PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Tarenaya hassleriana][more]
gi|674949186|emb|CDX84182.1|2.5e-7799.35BnaC04g09440D [Brassica napus][more]
gi|923814276|ref|XP_013691855.1|2.5e-7799.35PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica napus][more]
gi|685305814|ref|XP_009143639.1|2.5e-7799.35PREDICTED: ubiquitin-NEDD8-like protein RUB2 [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR019956Ubiquitin
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009693 ethylene biosynthetic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G003010.1CmoCh20G003010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 79..150
score: 4.4E-28coord: 3..74
score: 3.6
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..72
score: 3.0E-35coord: 77..148
score: 1.3
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 77..152
score: 26.467coord: 1..76
score: 30
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
score: -coord: 103..128
scor
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 53..74
score: 6.0E-39coord: 11..31
score: 6.0E-39coord: 32..52
score: 6.0
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..79
score: 1.2E-50coord: 80..152
score: 6.5
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..152
score: 3.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G003010Cucsa.118440Cucumber (Gy14) v1cgycmoB0296
CmoCh20G003010CmaCh20G002780Cucurbita maxima (Rimu)cmacmoB550
CmoCh20G003010MELO3C019642Melon (DHL92) v3.5.1cmomeB494
CmoCh20G003010CSPI06G11160Wild cucumber (PI 183967)cmocpiB558
CmoCh20G003010MELO3C019642.2Melon (DHL92) v3.6.1cmomedB557
CmoCh20G003010CsaV3_6G013580Cucumber (Chinese Long) v3cmocucB0660
CmoCh20G003010Cla97C02G044510Watermelon (97103) v2cmowmbB545
CmoCh20G003010Bhi10G000739Wax gourdcmowgoB0686
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G003010Silver-seed gourdcarcmoB0042
CmoCh20G003010Silver-seed gourdcarcmoB0464
CmoCh20G003010Silver-seed gourdcarcmoB0533
CmoCh20G003010Silver-seed gourdcarcmoB0724
CmoCh20G003010Cucumber (Chinese Long) v3cmocucB0670
CmoCh20G003010Watermelon (97103) v2cmowmbB573
CmoCh20G003010Wax gourdcmowgoB0676
CmoCh20G003010Cucurbita moschata (Rifu)cmocmoB114
CmoCh20G003010Cucurbita moschata (Rifu)cmocmoB380
CmoCh20G003010Cucurbita moschata (Rifu)cmocmoB411
CmoCh20G003010Cucumber (Gy14) v1cgycmoB0667
CmoCh20G003010Cucurbita maxima (Rimu)cmacmoB150
CmoCh20G003010Cucurbita maxima (Rimu)cmacmoB514
CmoCh20G003010Cucurbita maxima (Rimu)cmacmoB613
CmoCh20G003010Wild cucumber (PI 183967)cmocpiB566
CmoCh20G003010Cucumber (Chinese Long) v2cmocuB553
CmoCh20G003010Cucumber (Chinese Long) v2cmocuB560
CmoCh20G003010Melon (DHL92) v3.5.1cmomeB507
CmoCh20G003010Watermelon (Charleston Gray)cmowcgB471
CmoCh20G003010Watermelon (Charleston Gray)cmowcgB479
CmoCh20G003010Watermelon (97103) v1cmowmB501
CmoCh20G003010Watermelon (97103) v1cmowmB513
CmoCh20G003010Cucurbita pepo (Zucchini)cmocpeB512
CmoCh20G003010Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G003010Cucurbita pepo (Zucchini)cmocpeB527
CmoCh20G003010Cucurbita pepo (Zucchini)cmocpeB524
CmoCh20G003010Bottle gourd (USVL1VR-Ls)cmolsiB490
CmoCh20G003010Bottle gourd (USVL1VR-Ls)cmolsiB497
CmoCh20G003010Cucumber (Gy14) v2cgybcmoB778
CmoCh20G003010Cucumber (Gy14) v2cgybcmoB936
CmoCh20G003010Melon (DHL92) v3.6.1cmomedB581