CSPI05G29740 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G29740
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Late embryogenesis abundant protein (LEA) family protein
Location	Chr5 : 27897725 .. 27898385 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCAAACAAGTTTAGAAGAATCATATATTCACAAATTGATCTAATTCTTATTCTAAACTTTCTCTTTCACAATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGTTTTCGTCTATTCTATATCTTTTTTTATTTTTAAAACATTTATTAAAAGTATAATGAGTATGATGTTGGTGGGTTGTATTGTTAATTATATAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAAAACCATATATCAATCATCCTTATTATTGATATTTGATCAATTAATTATGAGTTTTACTTTTCGAGTTTGGGATTTGTTTGGTTACTCCTTTTCTTAGGGGGGTTTTTCAAAGATGTCAAATAAATTCCTATTGGAATTTCTTTTCATTTTCAACTTTCATTTATATATGAATATATTTTCTTAGATCATATTCAAAGTAATTGTTGCTAAATAATGATTATAGATTTAATTATGTCTATCTAAATCCAAGATCATAGTGCCATTTTTTTTAAAGAAATATTATCAATTTTCAA

mRNA sequence

ATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAA

Coding sequence (CDS)

ATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAA

Homology

[Close]

BLAST of CSPI05G29740 vs. TrEMBL
Match: A0A0A0KSI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.3e-24
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA
Sbjct: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CSPI05G29740 vs. TrEMBL
Match: A0A0A0KXN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-17
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADN S KMS+ AGEAKGQ QEK SN+MDKAS+AA+SAKES+QETGQQMMAKAQGAADA 
Sbjct: 1  MADN-SQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CSPI05G29740 vs. TrEMBL
Match: A0A072U7W6_MEDTR (Late embryogenesis abundant protein (LEA) family protein OS=Medicago truncatula GN=MTR_6g016530 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-15
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 5  NSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDAV 64
          +SN  S+ AG+AKGQ QEKASNLMDKASNAA+SAKES+QETGQQM AKAQGA D+AKD+ 
Sbjct: 2  DSNNASYNAGQAKGQTQEKASNLMDKASNAAQSAKESMQETGQQMQAKAQGAVDSAKDST 61

Query: 65 NK 67
          NK
Sbjct: 62 NK 63

[Close]

BLAST of CSPI05G29740 vs. TrEMBL
Match: A0A072U6B3_MEDTR (Late embryogenesis abundant protein (LEA) family protein OS=Medicago truncatula GN=MTR_6g016515 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-14
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 5  NSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDAV 64
          +SN+ S+ AG+AKGQ QEKASN+MDKASNAA+SAKESIQETGQQM AKAQGA D+AK++ 
Sbjct: 2  DSNQASYNAGQAKGQTQEKASNMMDKASNAAQSAKESIQETGQQMQAKAQGATDSAKNST 61

Query: 65 NK 67
          NK
Sbjct: 62 NK 63

[Close]

BLAST of CSPI05G29740 vs. TrEMBL
Match: A0A0A0KPD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-14
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADN+ N MS+Q GEAKGQAQEKASN+M+KAS+AA+SAKESIQE GQQM AKAQGAADA 
Sbjct: 1  MADNSQN-MSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAV 60

Query: 61 KDA 64
          KDA
Sbjct: 61 KDA 62

[Close]

BLAST of CSPI05G29740 vs. TAIR10
Match: AT5G53820.1 (AT5G53820.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-15
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKD 63
          NNS  MSF AG+AKGQ QEKASNL+DKASNAA+SAKESIQE GQQ+  KAQGA++  K+
Sbjct: 3  NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

[Close]

BLAST of CSPI05G29740 vs. TAIR10
Match: AT5G38760.1 (AT5G38760.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-14
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDA 63
          +NS  +SFQAG+AKGQ QEKAS +MDKASNAA+SAKES++ETGQQ+  KAQGA ++ K+A
Sbjct: 3  SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

[Close]

BLAST of CSPI05G29740 vs. TAIR10
Match: AT3G02480.1 (AT3G02480.1 Late embryogenesis abundant protein (LEA) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-11
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKD 63
          +N    S+QAG+A GQ +EKA  +MDKA +AA SA++S+Q+TGQQM  KAQGAAD  KD
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

[Close]

BLAST of CSPI05G29740 vs. NCBI nr
Match: gi|449447456|ref|XP_004141484.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA
Sbjct: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CSPI05G29740 vs. NCBI nr
Match: gi|659119056|ref|XP_008459451.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS  MS+QAGEAKGQAQEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MADTNSQNMSYQAGEAKGQAQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CSPI05G29740 vs. NCBI nr
Match: gi|449447458|ref|XP_004141485.1| (PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADN S KMS+ AGEAKGQ QEK SN+MDKAS+AA+SAKES+QETGQQMMAKAQGAADA 
Sbjct: 1  MADN-SQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CSPI05G29740 vs. NCBI nr
Match: gi|659119054|ref|XP_008459450.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-17
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADN S KMS+ AGEAKGQ QEK SN+MDKASNAAESAKES QETGQQ+MAKA+GAADA 
Sbjct: 1  MADN-SQKMSYNAGEAKGQTQEKVSNMMDKASNAAESAKESAQETGQQIMAKAEGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CSPI05G29740 vs. NCBI nr
Match: gi|659119052|ref|XP_008459449.1| (PREDICTED: stress-induced protein KIN2-like [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDA 63
          +NS KMS+ AGEAKGQ QEK SN+MDKASNAA+S KES+QE GQQMMAKAQGA DA KDA
Sbjct: 2  DNSQKMSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKDA 61

Query: 64 VNK 67
          VNK
Sbjct: 62 VNK 64

The following BLAST results are available for this feature:

BLAST of CSPI05G29740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G29740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSI8_CUCSA	8.3e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643240 PE=4 SV=1	[more]
A0A0A0KXN2_CUCSA	2.0e-17	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643250 PE=4 SV=1	[more]
A0A072U7W6_MEDTR	5.4e-15	77.42	Late embryogenesis abundant protein (LEA) family protein OS=Medicago truncatula ...	[more]
A0A072U6B3_MEDTR	1.2e-14	75.81	Late embryogenesis abundant protein (LEA) family protein OS=Medicago truncatula ...	[more]
A0A0A0KPD4_CUCSA	1.6e-14	80.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G165870 PE=4 SV=1	[more]

BLAST of CSPI05G29740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53820.1	4.8e-15	72.88	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	1.8e-14	68.33	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	3.2e-11	59.32	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of CSPI05G29740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447456\|ref\|XP_004141484.1\|	1.2e-23	100.00	PREDICTED: stress-induced protein KIN2-like [Cucumis sativus]	[more]
gi\|659119056\|ref\|XP_008459451.1\|	3.6e-20	89.39	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|449447458\|ref\|XP_004141485.1\|	2.9e-17	83.33	PREDICTED: late embryogenesis abundant protein 2-like [Cucumis sativus]	[more]
gi\|659119054\|ref\|XP_008459450.1\|	4.9e-17	83.33	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]
gi\|659119052\|ref\|XP_008459449.1\|	3.2e-16	79.37	PREDICTED: stress-induced protein KIN2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G29740.1	CSPI05G29740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 21..48 scor
None	No IPR available	PANTHER	PTHR34191	FAMILY NOT NAMED	coord: 4..63 score: 8.5
None	No IPR available	PANTHER	PTHR34191:SF2	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 4..63 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G29740	Csa5G643240	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G29740	MELO3C022080	Melon (DHL92) v3.5.1	cpimeB346
CSPI05G29740	CsaV3_5G038860	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G29740	CsGy5G029170	Cucumber (Gy14) v2	cgybcpiB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G29740	Silver-seed gourd	carcpiB0022
CSPI05G29740	Silver-seed gourd	carcpiB0297
CSPI05G29740	Watermelon (97103) v2	cpiwmbB374
CSPI05G29740	Wax gourd	cpiwgoB473
CSPI05G29740	Wild cucumber (PI 183967)	cpicpiB177
CSPI05G29740	Cucumber (Gy14) v1	cgycpiB353
CSPI05G29740	Cucumber (Gy14) v1	cgycpiB435
CSPI05G29740	Cucurbita maxima (Rimu)	cmacpiB304
CSPI05G29740	Cucurbita maxima (Rimu)	cmacpiB730
CSPI05G29740	Cucurbita moschata (Rifu)	cmocpiB296
CSPI05G29740	Cucurbita moschata (Rifu)	cmocpiB722
CSPI05G29740	Cucumber (Chinese Long) v2	cpicuB251
CSPI05G29740	Melon (DHL92) v3.5.1	cpimeB349
CSPI05G29740	Watermelon (Charleston Gray)	cpiwcgB370
CSPI05G29740	Watermelon (97103) v1	cpiwmB414
CSPI05G29740	Watermelon (97103) v1	cpiwmB450
CSPI05G29740	Cucurbita pepo (Zucchini)	cpecpiB177
CSPI05G29740	Cucurbita pepo (Zucchini)	cpecpiB414
CSPI05G29740	Bottle gourd (USVL1VR-Ls)	cpilsiB357
CSPI05G29740	Melon (DHL92) v3.6.1	cpimedB334
CSPI05G29740	Melon (DHL92) v3.6.1	cpimedB339
CSPI05G29740	Melon (DHL92) v3.6.1	cpimedB373