CSPI02G22880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G22880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19852611 .. 19853754 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTCTTTTCTTCATTCGTATCACCATTTCATCATTTCATCATTTCTGCATTTCATCTATTTCACTGCTCTTCCTTGTTTTATCCCTTCTGATGCTGCTCCCCATCCTGATTTATGCATTTCTTGTTTGTTTACACTTTTGATTGATCCCCGATTCCACTTCGCCTTCTTTCTTTTTCCGCTTCGTGAACTATGCATTTGGGTTTTTTATTTGTCTGCTTATATTCTCGTTCATTAATTTAATATATCTGTTTCACCACCTTTCTTATGGACGCGGCCATCCATCGATTTTTTTAGGTTTTTTGTCACCTGGGTTTTTAGATTATATTAAATAATTATCGATTGATCCAAGATCTTAAGTTGATGAATTACGTTATACGACGACACTCAACAAGTGGAAAATAAGGATTGATTCAAATTCTTTGGAGGTCATTGAAATCGTTAACAAAGTTTGTGTGCTTATCTGAGACGTGGAATGTTGGTGAGGATATTATTTCCCTTGCTTGTTAGGTTAATGTCACAAGGATTTTTTTTGTAATAGGACTTGCAATAAGGTTGCTCATGCCTTTTTTTGATCGAAGGACTGACTGTTCCACCATGACTTATTTTGTAGTTCCTCGTCCGGGACTTGAAGATTTTTTTTTTTTTGAGGTGACTGGTTTAGGCATAGAGTTTCCACTGCTTTATCTAAGGACCTTCTTTGTATTTAATTTATTATTTGTTTAATGTATTTGAAAAGAGCAAGTGGAAAATAATATTGATTGAAGAGAGAAATGAATTTGAACACAAAGATTGACCTAAAAGTTTAAGCTGATGGATTATAGTAAATTTAACTGTACCAATAGTTTAATGGATTATATCTTTGAATATTGCTAAGAATTTTGATGTTTTTCAGGTTTTCGCTGGTAAACGACGAGTGTTAGTTTGATATTTGTTGTAGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

mRNA sequence

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

Coding sequence (CDS)

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG
Homology
[Close]
BLAST of CSPI02G22880 vs. TrEMBL
Match: A0A0A0LPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379130 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

[Close]
BLAST of CSPI02G22880 vs. NCBI nr
Match: gi|700207763|gb|KGN62882.1| (hypothetical protein Csa_2G379130 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

The following BLAST results are available for this feature:
BLAST of CSPI02G22880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPZ4_CUCSA2.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379130 PE=4 SV=1[more]
BLAST of CSPI02G22880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G22880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207763|gb|KGN62882.1|3.3e-35100.00hypothetical protein Csa_2G379130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G22880.1CSPI02G22880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G22880Csa2G379130Cucumber (Chinese Long) v2cpicuB065
CSPI02G22880CsaV3_2G031520Cucumber (Chinese Long) v3cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB093
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB540
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB775
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB811
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB819
CSPI02G22880Cucurbita pepo (Zucchini)cpecpiB826
CSPI02G22880Bottle gourd (USVL1VR-Ls)cpilsiB120
CSPI02G22880Bottle gourd (USVL1VR-Ls)cpilsiB139
CSPI02G22880Melon (DHL92) v3.6.1cpimedB119
CSPI02G22880Melon (DHL92) v3.6.1cpimedB114
CSPI02G22880Cucumber (Gy14) v2cgybcpiB057
CSPI02G22880Cucumber (Gy14) v2cgybcpiB105
CSPI02G22880Silver-seed gourdcarcpiB0063
CSPI02G22880Silver-seed gourdcarcpiB0587
CSPI02G22880Silver-seed gourdcarcpiB0664
CSPI02G22880Silver-seed gourdcarcpiB1010
CSPI02G22880Silver-seed gourdcarcpiB1014
CSPI02G22880Cucumber (Chinese Long) v3cpicucB095
CSPI02G22880Watermelon (97103) v2cpiwmbB143
CSPI02G22880Watermelon (97103) v2cpiwmbB162
CSPI02G22880Wax gourdcpiwgoB160
CSPI02G22880Wax gourdcpiwgoB202
CSPI02G22880Wild cucumber (PI 183967)cpicpiB066
CSPI02G22880Cucumber (Gy14) v1cgycpiB239
CSPI02G22880Cucumber (Gy14) v1cgycpiB469
CSPI02G22880Cucurbita maxima (Rimu)cmacpiB013
CSPI02G22880Cucurbita maxima (Rimu)cmacpiB165
CSPI02G22880Cucurbita maxima (Rimu)cmacpiB179
CSPI02G22880Cucurbita maxima (Rimu)cmacpiB445
CSPI02G22880Cucurbita maxima (Rimu)cmacpiB794
CSPI02G22880Cucurbita moschata (Rifu)cmocpiB003
CSPI02G22880Cucurbita moschata (Rifu)cmocpiB150
CSPI02G22880Cucurbita moschata (Rifu)cmocpiB164
CSPI02G22880Cucurbita moschata (Rifu)cmocpiB434
CSPI02G22880Cucurbita moschata (Rifu)cmocpiB783
CSPI02G22880Cucumber (Chinese Long) v2cpicuB075
CSPI02G22880Melon (DHL92) v3.5.1cpimeB118
CSPI02G22880Melon (DHL92) v3.5.1cpimeB124
CSPI02G22880Watermelon (Charleston Gray)cpiwcgB148
CSPI02G22880Watermelon (Charleston Gray)cpiwcgB168
CSPI02G22880Watermelon (97103) v1cpiwmB112
CSPI02G22880Watermelon (97103) v1cpiwmB133