CsaV3_2G031520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G031520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 20741461 .. 20742597 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTCTCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTCTTTTCTTCATTCGTATCACCATTTCATCATTTCTGCATTTCATCTATTTCACTGCTCTTCCTTGTTTTTTATCCCTTCTGATGCTGCTCCCCATCCTGATTTATGCATTTCTTGTTTGTTTACACTTTTGATTGATCCCCGATTCCACTTCGCCTTCTTTCTTTTTCCGCTTCGTGAACTATGCATTTGGGTTTTTTATTTGTCTGCTTATATTCTCGTTCATTAATTTAATATATCTGTTTCACCACCTTTCTTATGGACGCGGCCATCCATCGATTTTTTTAGGTTTTTTGTCACCTGGGTTTTTAGATTATATTACATAATTATCGATTGATCCAAGATCTTAAGTTGATGAATTACGTTATACGACGACACTCAACAAGTGGAAAATAAGGATTGATTCATATTCTTTGGAGGTCATTGAAATCGTTAACAAAGTTTGTGTGCTTATCTGAGACGTGGAATGTTGGTGAGGATATTATTTCCCTTGCTTGTTAGGTTAATGTCACAAGGATTTTTTTTGTAATAGGACTTGCAATAAGGTTGCTCATGCCTTTTTTTGATCGAAGGACTGACTGTTCCACCATGACTTATTTTGTAGTTCCTCTTCCGGGACTTGAAGATTTTTTTTTTTTGAGGTGACTGGTTTAGGCATAGAGTTTCCACTGCTTTATCTAAGGACCTTCTTTGTATTTAATTTATTATTTGTTTAATGTATTTGAAAAGAGCAAGTGGAAAATAATATTGATTGAAGAGAGAAATGAATTTGAACACAAAGATTGACCTAAAAGTTTAAGCTGATGGATTATAGTAAATTTAACTGTACCAATAGTTTAATGGATTATATCTTTGAATATTGCTAAGAATTTTGATGTTTTTCAGGTTTTCGCTGGTAAACGACGAGTGTTAGTTTGATATTTGTTGTAGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

mRNA sequence

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTCTCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

Coding sequence (CDS)

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTCTCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

Protein sequence

MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPLSKIDRSWQLAH
Homology
[Close]
BLAST of CsaV3_2G031520 vs. NCBI nr
Match: KGN62882.1 (hypothetical protein Csa_2G379130 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 6.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

[Close]
BLAST of CsaV3_2G031520 vs. TrEMBL
Match: tr|A0A0A0LPZ4|A0A0A0LPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379130 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

The following BLAST results are available for this feature:
BLAST of CsaV3_2G031520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62882.16.3e-35100.00hypothetical protein Csa_2G379130 [Cucumis sativus][more]
BLAST of CsaV3_2G031520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPZ4|A0A0A0LPZ4_CUCSA4.2e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G031520.1CsaV3_2G031520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G031520CSPI02G22880Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G031520Cucumber (Chinese Long) v3cuccucB075
CsaV3_2G031520Silver-seed gourdcarcucB0065
CsaV3_2G031520Silver-seed gourdcarcucB0588
CsaV3_2G031520Silver-seed gourdcarcucB0664
CsaV3_2G031520Silver-seed gourdcarcucB1015
CsaV3_2G031520Silver-seed gourdcarcucB1018
CsaV3_2G031520Cucumber (Gy14) v2cgybcucB065
CsaV3_2G031520Cucumber (Gy14) v2cgybcucB114
CsaV3_2G031520Cucumber (Gy14) v1cgycucB247
CsaV3_2G031520Cucumber (Gy14) v1cgycucB485
CsaV3_2G031520Cucurbita maxima (Rimu)cmacucB0017
CsaV3_2G031520Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G031520Cucurbita maxima (Rimu)cmacucB0207
CsaV3_2G031520Cucurbita maxima (Rimu)cmacucB0533
CsaV3_2G031520Cucurbita maxima (Rimu)cmacucB0927
CsaV3_2G031520Cucurbita moschata (Rifu)cmocucB0005
CsaV3_2G031520Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G031520Cucurbita moschata (Rifu)cmocucB0189
CsaV3_2G031520Cucurbita moschata (Rifu)cmocucB0519
CsaV3_2G031520Cucurbita moschata (Rifu)cmocucB0919
CsaV3_2G031520Cucurbita pepo (Zucchini)cpecucB0107
CsaV3_2G031520Cucurbita pepo (Zucchini)cpecucB0673
CsaV3_2G031520Cucurbita pepo (Zucchini)cpecucB0959
CsaV3_2G031520Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G031520Cucurbita pepo (Zucchini)cpecucB1019
CsaV3_2G031520Wild cucumber (PI 183967)cpicucB141
CsaV3_2G031520Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G031520Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G031520Melon (DHL92) v3.5.1cucmeB127
CsaV3_2G031520Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G031520Melon (DHL92) v3.6.1cucmedB121
CsaV3_2G031520Watermelon (Charleston Gray)cucwcgB151
CsaV3_2G031520Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G031520Watermelon (97103) v1cucwmB121
CsaV3_2G031520Watermelon (97103) v1cucwmB139
CsaV3_2G031520Watermelon (97103) v2cucwmbB138
CsaV3_2G031520Watermelon (97103) v2cucwmbB160
CsaV3_2G031520Wax gourdcucwgoB170
CsaV3_2G031520Wax gourdcucwgoB208