CSPI02G22880.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G22880.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 19852611 .. 19853754 (-)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTCTTTTCTTCATTCGTATCACCATTTCATCATTTCATCATTTCTGCATTTCATCTATTTCACTGCTCTTCCTTGTTTTATCCCTTCTGATGCTGCTCCCCATCCTGATTTATGCATTTCTTGTTTGTTTACACTTTTGATTGATCCCCGATTCCACTTCGCCTTCTTTCTTTTTCCGCTTCGTGAACTATGCATTTGGGTTTTTTATTTGTCTGCTTATATTCTCGTTCATTAATTTAATATATCTGTTTCACCACCTTTCTTATGGACGCGGCCATCCATCGATTTTTTTAGGTTTTTTGTCACCTGGGTTTTTAGATTATATTAAATAATTATCGATTGATCCAAGATCTTAAGTTGATGAATTACGTTATACGACGACACTCAACAAGTGGAAAATAAGGATTGATTCAAATTCTTTGGAGGTCATTGAAATCGTTAACAAAGTTTGTGTGCTTATCTGAGACGTGGAATGTTGGTGAGGATATTATTTCCCTTGCTTGTTAGGTTAATGTCACAAGGATTTTTTTTGTAATAGGACTTGCAATAAGGTTGCTCATGCCTTTTTTTGATCGAAGGACTGACTGTTCCACCATGACTTATTTTGTAGTTCCTCGTCCGGGACTTGAAGATTTTTTTTTTTTTGAGGTGACTGGTTTAGGCATAGAGTTTCCACTGCTTTATCTAAGGACCTTCTTTGTATTTAATTTATTATTTGTTTAATGTATTTGAAAAGAGCAAGTGGAAAATAATATTGATTGAAGAGAGAAATGAATTTGAACACAAAGATTGACCTAAAAGTTTAAGCTGATGGATTATAGTAAATTTAACTGTACCAATAGTTTAATGGATTATATCTTTGAATATTGCTAAGAATTTTGATGTTTTTCAGGTTTTCGCTGGTAAACGACGAGTGTTAGTTTGATATTTGTTGTAGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

mRNA sequence

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG

Coding sequence (CDS)

ATGTCCAGGGATCACTACAATAATTATTCTCCTCACTCTTCACTCACATGTCTGCCACTATCTCCCTACTTTACTCTCTCTCCCTCCTTTGATCTCAGGTTTTCGCTGTGTATAAGACAAGGCATTGATGGCGATGGGACTTTTTCTGGATACATGAGAAACATGGCCACAACGCCTTTATCAAAAATTGACCGTTCATGGCAGCTTGCACACTAG
Homology
[Close]
BLAST of CSPI02G22880.1 vs. TrEMBL
Match: A0A0A0LPZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379130 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

[Close]
BLAST of CSPI02G22880.1 vs. NCBI nr
Match: gi|700207763|gb|KGN62882.1| (hypothetical protein Csa_2G379130 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60
          MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL
Sbjct: 1  MSRDHYNNYSPHSSLTCLPLSPYFTLSPSFDLRFSLCIRQGIDGDGTFSGYMRNMATTPL 60

Query: 61 SKIDRSWQLAH 72
          SKIDRSWQLAH
Sbjct: 61 SKIDRSWQLAH 71

The following BLAST results are available for this feature:
BLAST of CSPI02G22880.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G22880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPZ4_CUCSA2.3e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379130 PE=4 SV=1[more]
BLAST of CSPI02G22880.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G22880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207763|gb|KGN62882.1|3.3e-35100.00hypothetical protein Csa_2G379130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G22880CSPI02G22880gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G22880.1CSPI02G22880.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G22880.1.cds3CSPI02G22880.1.cds3CDS
CSPI02G22880.1.cds2CSPI02G22880.1.cds2CDS
CSPI02G22880.1.cds1CSPI02G22880.1.cds1CDS