CSPI02G19360 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G19360
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 17590416 .. 17590998 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGAAAGTTACCTTTTAATTTGTTCTCCTAGGTAGCGTACTTTTCTTAGACTACTGGGCTATCAGCAATTTCAATCTCTACGAAACACTAAAGACCCAAAGTTGTTCAATTTTAAACTAGCATAATGTTCAACTCAAATCTTCCATAACATAAAAAGTCTCTTGGTTCTATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGTTCGTTTGAGCTTACAGACGTTCTTCCATTGTAAGTATCGAAACTCAAAAGATATATATGTAATATAGAAAATACCTTATACCAACGGAGGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGGTAGGACGCAACGGAAAATGGAGAGGCAGAAGGCGGGGGATTATATATATTTTTTTCTTCTTTTTATTTACTCTTTTAGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

mRNA sequence

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Coding sequence (CDS)

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA
Homology
[Close]
BLAST of CSPI02G19360 vs. TrEMBL
Match: A0A0A0LNH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

[Close]
BLAST of CSPI02G19360 vs. NCBI nr
Match: gi|700207415|gb|KGN62534.1| (hypothetical protein Csa_2G360020 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

The following BLAST results are available for this feature:
BLAST of CSPI02G19360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH2_CUCSA6.5e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1[more]
BLAST of CSPI02G19360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207415|gb|KGN62534.1|9.3e-39100.00hypothetical protein Csa_2G360020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G19360.1CSPI02G19360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G19360Csa2G360020Cucumber (Chinese Long) v2cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G19360Wax gourdcpiwgoB159
CSPI02G19360Wax gourdcpiwgoB198
CSPI02G19360Wild cucumber (PI 183967)cpicpiB074
CSPI02G19360Wild cucumber (PI 183967)cpicpiB091
CSPI02G19360Cucumber (Gy14) v1cgycpiB163
CSPI02G19360Cucumber (Gy14) v1cgycpiB341
CSPI02G19360Cucurbita maxima (Rimu)cmacpiB011
CSPI02G19360Cucurbita maxima (Rimu)cmacpiB175
CSPI02G19360Cucurbita maxima (Rimu)cmacpiB439
CSPI02G19360Cucurbita maxima (Rimu)cmacpiB513
CSPI02G19360Cucurbita maxima (Rimu)cmacpiB793
CSPI02G19360Cucurbita moschata (Rifu)cmocpiB002
CSPI02G19360Cucurbita moschata (Rifu)cmocpiB160
CSPI02G19360Cucurbita moschata (Rifu)cmocpiB428
CSPI02G19360Cucurbita moschata (Rifu)cmocpiB782
CSPI02G19360Cucumber (Chinese Long) v2cpicuB080
CSPI02G19360Cucumber (Chinese Long) v2cpicuB096
CSPI02G19360Melon (DHL92) v3.5.1cpimeB118
CSPI02G19360Melon (DHL92) v3.5.1cpimeB148
CSPI02G19360Watermelon (Charleston Gray)cpiwcgB136
CSPI02G19360Watermelon (Charleston Gray)cpiwcgB144
CSPI02G19360Watermelon (Charleston Gray)cpiwcgB172
CSPI02G19360Watermelon (97103) v1cpiwmB116
CSPI02G19360Watermelon (97103) v1cpiwmB129
CSPI02G19360Watermelon (97103) v1cpiwmB153
CSPI02G19360Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G19360Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G19360Cucurbita pepo (Zucchini)cpecpiB773
CSPI02G19360Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G19360Bottle gourd (USVL1VR-Ls)cpilsiB114
CSPI02G19360Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G19360Melon (DHL92) v3.6.1cpimedB114
CSPI02G19360Melon (DHL92) v3.6.1cpimedB142
CSPI02G19360Cucumber (Gy14) v2cgybcpiB057
CSPI02G19360Cucumber (Gy14) v2cgybcpiB163
CSPI02G19360Cucumber (Gy14) v2cgybcpiB305
CSPI02G19360Silver-seed gourdcarcpiB0115
CSPI02G19360Silver-seed gourdcarcpiB0209
CSPI02G19360Silver-seed gourdcarcpiB0303
CSPI02G19360Silver-seed gourdcarcpiB0806
CSPI02G19360Cucumber (Chinese Long) v3cpicucB081
CSPI02G19360Cucumber (Chinese Long) v3cpicucB103
CSPI02G19360Watermelon (97103) v2cpiwmbB137
CSPI02G19360Watermelon (97103) v2cpiwmbB166