CSPI02G19360.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI02G19360.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 17590416 .. 17590998 (-)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGAAAGTTACCTTTTAATTTGTTCTCCTAGGTAGCGTACTTTTCTTAGACTACTGGGCTATCAGCAATTTCAATCTCTACGAAACACTAAAGACCCAAAGTTGTTCAATTTTAAACTAGCATAATGTTCAACTCAAATCTTCCATAACATAAAAAGTCTCTTGGTTCTATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGTTCGTTTGAGCTTACAGACGTTCTTCCATTGTAAGTATCGAAACTCAAAAGATATATATGTAATATAGAAAATACCTTATACCAACGGAGGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGGTAGGACGCAACGGAAAATGGAGAGGCAGAAGGCGGGGGATTATATATATTTTTTTCTTCTTTTTATTTACTCTTTTAGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

mRNA sequence

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Coding sequence (CDS)

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA
Homology
[Close]
BLAST of CSPI02G19360.1 vs. TrEMBL
Match: A0A0A0LNH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

[Close]
BLAST of CSPI02G19360.1 vs. NCBI nr
Match: gi|700207415|gb|KGN62534.1| (hypothetical protein Csa_2G360020 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

The following BLAST results are available for this feature:
BLAST of CSPI02G19360.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19360.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH2_CUCSA6.5e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1[more]
BLAST of CSPI02G19360.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19360.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207415|gb|KGN62534.1|9.3e-39100.00hypothetical protein Csa_2G360020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI02G19360CSPI02G19360gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI02G19360.1CSPI02G19360.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19360.1.cds3CSPI02G19360.1.cds3CDS
CSPI02G19360.1.cds2CSPI02G19360.1.cds2CDS
CSPI02G19360.1.cds1CSPI02G19360.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI02G19360.1.utr5p1CSPI02G19360.1.utr5p1five_prime_UTR