Csa2G360020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G360020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 16976860 .. 16977643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAATTTCCAACAACCTTGAGATATATGCAACGGAAATTATTAGCTCATTACAGTGCAAGAGCCTATTGAAAAGGGGTAAACAGTATAGATGTTGAAAGTTCCAATTTCGAGCTTAATGAAAAAAATGATATCAAATTCGTTGAGCAAATGAAATAGTTAGTAAAATTCCATAGGTATAAGATATTAAGGTGTTGTGGGAAAGTTACCTTTTAATTTGTTCTCCTAGGTAGCGTACTTTTCTTAGACTACTGGGCTATCAGCAATTTCAATCTCTACGAAACACTAAAGACCCAAAGTTGTTCAATTTTAAACTAGCATAATGTTCAACTCAAATCTTCCATAACATAAAAAGTCTCTTGGTTCTATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGTTCGTTTGAGCTTACAGACGTTCTTCCATTGTAAGTATCGAAACTCAAAAGATATATATGTAATATAGAAAATACCTTATACCAACGGAGGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGGTAGGACGCAACGGAAAATGGAGACGCAGAAGGCGGGGGATTATATATATTTTTTTCTTCTTTTTATTTACTCTTTTAGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

mRNA sequence

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Coding sequence (CDS)

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Protein sequence

MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMIKCVWAVRLGRRADEGWVWLY*
Homology
[Close]
BLAST of Csa2G360020 vs. TrEMBL
Match: A0A0A0LNH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

[Close]
BLAST of Csa2G360020 vs. NCBI nr
Match: gi|700207415|gb|KGN62534.1| (hypothetical protein Csa_2G360020 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

The following BLAST results are available for this feature:
BLAST of Csa2G360020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH2_CUCSA3.4e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1[more]
BLAST of Csa2G360020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207415|gb|KGN62534.1|4.9e-40100.00hypothetical protein Csa_2G360020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G360020.1Csa2G360020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G360020CSPI02G19360Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G360020Watermelon (97103) v2cuwmbB135
Csa2G360020Watermelon (97103) v2cuwmbB163
Csa2G360020Wax gourdcuwgoB162
Csa2G360020Wax gourdcuwgoB198
Csa2G360020Cucumber (Chinese Long) v2cucuB062
Csa2G360020Cucumber (Chinese Long) v2cucuB079
Csa2G360020Cucumber (Gy14) v1cgycuB162
Csa2G360020Cucumber (Gy14) v1cgycuB326
Csa2G360020Cucurbita maxima (Rimu)cmacuB011
Csa2G360020Cucurbita maxima (Rimu)cmacuB174
Csa2G360020Cucurbita maxima (Rimu)cmacuB437
Csa2G360020Cucurbita maxima (Rimu)cmacuB784
Csa2G360020Cucurbita moschata (Rifu)cmocuB002
Csa2G360020Cucurbita moschata (Rifu)cmocuB158
Csa2G360020Cucurbita moschata (Rifu)cmocuB424
Csa2G360020Cucurbita moschata (Rifu)cmocuB777
Csa2G360020Melon (DHL92) v3.5.1cumeB117
Csa2G360020Melon (DHL92) v3.5.1cumeB149
Csa2G360020Watermelon (Charleston Gray)cuwcgB140
Csa2G360020Watermelon (Charleston Gray)cuwcgB169
Csa2G360020Watermelon (97103) v1cuwmB111
Csa2G360020Watermelon (97103) v1cuwmB126
Csa2G360020Cucurbita pepo (Zucchini)cpecuB096
Csa2G360020Cucurbita pepo (Zucchini)cpecuB539
Csa2G360020Cucurbita pepo (Zucchini)cpecuB771
Csa2G360020Cucurbita pepo (Zucchini)cpecuB819
Csa2G360020Bottle gourd (USVL1VR-Ls)culsiB117
Csa2G360020Bottle gourd (USVL1VR-Ls)culsiB142
Csa2G360020Cucumber (Gy14) v2cgybcuB057
Csa2G360020Cucumber (Gy14) v2cgybcuB160
Csa2G360020Cucumber (Gy14) v2cgybcuB297
Csa2G360020Melon (DHL92) v3.6.1cumedB114
Csa2G360020Melon (DHL92) v3.6.1cumedB141
Csa2G360020Silver-seed gourdcarcuB0110
Csa2G360020Silver-seed gourdcarcuB0202
Csa2G360020Silver-seed gourdcarcuB0299
Csa2G360020Silver-seed gourdcarcuB0788