Csa2G360020.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G360020.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 16976860 .. 16977643 (-)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAATTTCCAACAACCTTGAGATATATGCAACGGAAATTATTAGCTCATTACAGTGCAAGAGCCTATTGAAAAGGGGTAAACAGTATAGATGTTGAAAGTTCCAATTTCGAGCTTAATGAAAAAAATGATATCAAATTCGTTGAGCAAATGAAATAGTTAGTAAAATTCCATAGGTATAAGATATTAAGGTGTTGTGGGAAAGTTACCTTTTAATTTGTTCTCCTAGGTAGCGTACTTTTCTTAGACTACTGGGCTATCAGCAATTTCAATCTCTACGAAACACTAAAGACCCAAAGTTGTTCAATTTTAAACTAGCATAATGTTCAACTCAAATCTTCCATAACATAAAAAGTCTCTTGGTTCTATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGTTCGTTTGAGCTTACAGACGTTCTTCCATTGTAAGTATCGAAACTCAAAAGATATATATGTAATATAGAAAATACCTTATACCAACGGAGGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGGTAGGACGCAACGGAAAATGGAGACGCAGAAGGCGGGGGATTATATATATTTTTTTCTTCTTTTTATTTACTCTTTTAGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

mRNA sequence

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Coding sequence (CDS)

ATGGTTTTTGGCGAAACTGATAATCAAAATAATGATCTTAAGAATGAACAATCAAAGGAATATCTGAACTCCTTGATTAGGAAAAATCGATTCTCAAATCGAACCGATCTTCCCGGAAGAAGATCGGCAGAGAAGGTTTGCGGTGCTGAGCAAGGTGGAGAACGCGGCGGCGGGATGATCAAGTGCGTTTGGGCCGTTAGATTGGGCAGGCGGGCTGATGAAGGATGGGTTTGGTTATATTGA

Protein sequence

MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMIKCVWAVRLGRRADEGWVWLY*
Homology
[Close]
BLAST of Csa2G360020.1 vs. TrEMBL
Match: A0A0A0LNH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

[Close]
BLAST of Csa2G360020.1 vs. NCBI nr
Match: gi|700207415|gb|KGN62534.1| (hypothetical protein Csa_2G360020 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60
          MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI
Sbjct: 1  MVFGETDNQNNDLKNEQSKEYLNSLIRKNRFSNRTDLPGRRSAEKVCGAEQGGERGGGMI 60

Query: 61 KCVWAVRLGRRADEGWVWLY 81
          KCVWAVRLGRRADEGWVWLY
Sbjct: 61 KCVWAVRLGRRADEGWVWLY 80

The following BLAST results are available for this feature:
BLAST of Csa2G360020.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH2_CUCSA3.4e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360020 PE=4 SV=1[more]
BLAST of Csa2G360020.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207415|gb|KGN62534.1|4.9e-40100.00hypothetical protein Csa_2G360020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G360020Csa2G360020gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G360020.1Csa2G360020.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G360020.1.cds3Csa2G360020.1.cds3CDS
Csa2G360020.1.cds2Csa2G360020.1.cds2CDS
Csa2G360020.1.cds1Csa2G360020.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G360020.1.utr5p1Csa2G360020.1.utr5p1five_prime_UTR