CSPI01G17980 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAAATATATTTTTTGTTTTATTATTATCTTTTTAAAATTAAGAAATCGATAAATGAAATAAAATCGCTTCACTTTATCCGAACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCCCTCCACCACTCTCTCTTCTCTATATTTTTGTATGGTTAAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTCTTCTAGATAGTTTGAACATATTTTGTTGTTTATTTCAAACGAATTTTTATTATAATACGAGAATGGCATGTTGAATTTTAAACCCTTTAAATCACCCAATTCTAGACGCTTACTGAATGAGCTAATAGCATTATGAATTGTTGAACAATACGCCTCTGTCTTCTCTGTTTTTACTGGGATTTTCCCTGTTCATTTTGATTTTATTGTTTTGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTAATGTTCATGATTCTTTATTTGTTATGCTGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAAGATTTATATAAACGGTCATAACTTAGCCAATGTAGCCACTACTTTCAATCCCTATGATTCTTCTCTAAGTTATCTACCAATTTCCCTCTCTTAAATGCAAGTTATCAAAGTAGTTATGTGAAGAATCTTACCGAAGTTGGAATGTACTTCCTCATTTGATTCAATCCCGATCATATTGTCAGCTAATAACGTGCATTCCAACTCAATTAACTTTGTATTGGAAGTATGATCTAATTTGAAGTTATTCATCGGTTGTCATGGTCTGTTCAGACAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAGATTTCACAAAGATCATTTAGGAAACAAGTTTTGTTTCGTTTTGTGCCCAAGACCTTGTCCAGGAACCCCAAGCACAAGAAAATATAGCTTCGAACATACCTTTAGTTTTGGATCTTCAAAATTTTTTACACTAGCTATAGTGTTGATTGGTTTTTTATTGGTTGCTTCCGACTCCGAAATGGATAACCAATTGAGGGGGGGATATAAAGGGTACAATCTTCTTCCAACCTTGAACATTTTGAAGGGAGAGGTTCAAGAGACAAGATGACTTTTTGCCTATCACTTTCTCAGTTGATTTCTTGTAGTTGGAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTCAAATCTGATTCCATCTTGATTGTTTCTGTCTGGTTTAGTCTGCTGATTTTCCCTGAGCATATAGATGTTTTGCGTTTTTATCATGTAGCATATGGTTAGTGAACTCTTAGATCAACAAAATACTTCACCTAGGAATTCCTTTTATCAACAATATTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATACACAATGAACTGACCGTCCTATTCAGTCTCATCAATTGCCGAAACAAAATGAAGGTAAGAAGGTAAGAAATCCAACGAGGAAAATGATTTTGGTCACTTGTTTTGTTGAATGATGACCCCTGGAAAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATGAATATAGTAATGGAG ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 9.9e-34 Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31 Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 1
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_SYNE7 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmI PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_SYNP6 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
BLAST of CSPI01G17980 vs. Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
BLAST of CSPI01G17980 vs. TrEMBL
Match: A0A0A0LYX0_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus GN=Csa_1G257920 PE=3 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 7.3e-76 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of CSPI01G17980 vs. TrEMBL
Match: W9SHK1_9ROSA (50S ribosomal protein L35 OS=Morus notabilis GN=L484_008496 PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42 Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1
BLAST of CSPI01G17980 vs. TrEMBL
Match: B9IMA0_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa GN=POPTR_0018s11170g PE=3 SV=2) HSP 1 Score: 175.3 bits (443), Expect = 5.8e-41 Identity = 105/151 (69.54%), Postives = 119/151 (78.81%), Query Frame = 1
BLAST of CSPI01G17980 vs. TrEMBL
Match: A5BPA4_VITVI (50S ribosomal protein L35 OS=Vitis vinifera GN=VIT_16s0115g00310 PE=3 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40 Identity = 104/158 (65.82%), Postives = 117/158 (74.05%), Query Frame = 1
BLAST of CSPI01G17980 vs. TrEMBL
Match: A9PBS9_POPTR (50S ribosomal protein L35 OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.9e-40 Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of CSPI01G17980 vs. TAIR10
Match: AT2G24090.1 (AT2G24090.1 Ribosomal protein L35) HSP 1 Score: 144.4 bits (363), Expect = 5.6e-35 Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 1
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|449457865|ref|XP_004146668.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis sativus]) HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|659086249|ref|XP_008443834.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]) HSP 1 Score: 276.6 bits (706), Expect = 2.7e-71 Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|703155119|ref|XP_010111119.1| (50S ribosomal protein L35 [Morus notabilis]) HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42 Identity = 102/150 (68.00%), Postives = 116/150 (77.33%), Query Frame = 1
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|1009109751|ref|XP_015891890.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 180.3 bits (456), Expect = 2.6e-42 Identity = 101/151 (66.89%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of CSPI01G17980 vs. NCBI nr
Match: gi|470148804|ref|XP_004309940.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Fragaria vesca subsp. vesca]) HSP 1 Score: 178.7 bits (452), Expect = 7.6e-42 Identity = 102/150 (68.00%), Postives = 115/150 (76.67%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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