ClCG08G002480 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATCCCAGCGATGGTGCTTGAAAGACGATCCCGCAATGGCGCTAGGGTGGACAGCAGACACGGACCTCATTATCAGTGCTAGGGTTGAAGGATTAGCAGCGGTGGCGATGAGTTGGTGACCTAGACAGCGGCAACGGATGGCTCCATCGGCGTCGGTAGGTTTGAAACATCACAGCAGTGGTGGAGCTAGGGTTACGCGATGGCGGCGACGCTAGGGTTCAGTGACCTGAGGTACTGGTCGACAACTTCTTGGATGCGGACCCCGCGGCAAATCTTGCCTAGAATCATTTTCGTCGACGACAACGAGGGCTTCTAGGGTTTCGCCACCACGCTCTGATACCATATTGAAATTAGGAGAAAAAAGAAATACTAGGTTTACGTGAAAAAACCCTTGTAAAGGAAGAAACTTCACGATTTAATTTTTCTCTTATAATTTTGATACACAATAATGTTACAAGAGGTGAAAATAAATAGAGACTCTAAAGAGCCCTAAACAATACAAGGAAAGAATATTAGGGAACATAAAAGGAAAAAATACACAGTATAAAATCTACAAAAAAAAGTCTCCAAATATCTTCTCTTATTTTTCTCAAAGCCTCTTGAATTCTGTCTTTGAGTTTTGTCAACCTACACGAAGAAAGTAGGAAACGCAAAGAGGAATGTCTTCTTTTGGAAATTGCATATTTTGACAATAAATCAGAATTGGATGCTTTGTCTTCTCATGAACTTCAACTTCTTTCATATGCAAAAAGTGAGCTAATGGGTCTTTATTTGGCTGAGGGGAGAAACATGATTCTGAAAGTTCCAATGGCTCCAGGTAGGTGATGGAAATACAGTCTCATTTCATTAATTCAACAAAAAGACTTGTTTCTGTTTAAGAAAAAAGTAGGTGATGAAAATACGAAATTCTTCCACTGTTTTTTGGCAGAAAAGAAAAGGAAATTGTTAATTTCAGAACTCAGATGGTTGCTCTTTTTGTTCATTTGGAGGAATTATAGTTGAAATTCTTGGCCTTTTCAAATCATTATATTAGAAATTTCCTTCAAATCATTATATTAGAAATTTCCGGTGGGTTTTCTCCAAATCTTTCAAGGGTAATGTTCTTCAGTTACTAATTGGCCTACCATTGGCTCCAAATATCAAAGTTTTGTGGATTAATGCAATTGAAGTACTTTCTGAATTTTAGCTGAAAAGATTCCAACGGATCTTTCATAGAAAACATATCTCTTGACTTGACCGTGTCGTATCAACTCGCCTTATGACTTCTTTTCTGGTTTCTCTTTCTAAGCCTTTTGTTGATTTTTCATTATAAATTTATAAGATACATGTCTTAACTGGATTGCATTCTTTCCTCCTTTGTAATTTATATTTTTCATTAGCTTGCTTTTATTATTTTTGTTTTCACTCTTTGGTGGAGCTTATATCTTTTAAGCATTAATCATTTTTCATTTCATCAATGAAAAATTTCATAACAACCTAGGGAATGGGGATAGAGGGGAGCCCTGCCCAAAGAAGTAACATTTGCCTTCCCCTCGTTAGTGATCATTACAAAGACTGTAATTAGAAAAGAATTTGGGATGGTTTGGGTACCACCAAAATGTGGTAAGTTTCATACTATTACAAAAGGATTTTAAAGTAAAAAATTTATACTCAAATGATTTCTTTTACTCCGGATATGCCATAGGAGGCCTTCAGCTGTGCAGCTCCACAGGGTTTTGGTCTTCCCTTTGATATTCCAACCTCTTAGAGCTTCTGCAGTCCAATCCTCAATTCTGTCGGGAAGACAACATAGCTCCCCCGCTTCATTAAAAAATAAAGTTCCAACTACCTGCTGCCAAAGGGCAGTGGAGAAAGAGGTGGTCCAAAGACTCACTCTGCTCTCTGAAGCAACAACAGGAAATGATGGGTGAGATTCTTACTGGATTTTTTTTTGCAATCTATCCATGGTATTTAGGCATCTGTATGCTAGACAGTAAACACCACTAGAATGCATTTGCTTTCTTTGGGATTTTAAAATTCCAGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGGTTCAAAAGCACTGATCTGGAAGAAAAAAGGCCTGATTTATCTAGGGTCTACGTGATTTTGTCTTGCTCAGTCCCCATAATGGATAAAAAGAGGAGCTCATCTTCTCAAACAACGCCAGTCAACTACCCACTTCATAGTCAAATAGACCTCTTCTTAAATTGAGATCTCAGGTTTGCTGAAAAGCCACTCAGCAATCAGAAAGGGAAGCTTCCATTCTTAGTGCGCTGTTCCTTTGAAAAGTGACCTCTCTGAAGGCCTCAGCAAACTGTAGAACGAGGAGACCTCCATTTAACAAGGCGTGAGATCTATTATTGAGATATTCTATGCATACCGTTATATGTAATGCATTTTGCATCTAGGCTATGGAGTGTTTTGTTCTTAAAAATATAGGGTGGCATATGTTAACAGGCGCTACTTTGTAAGTTGATAATTATGTTCTAAGAAAAAGCAATAATCTCTGATGTTTGTGAAAGAAACTTGTAAAGAAATAAAACCATTAAACTAATGGTTTAGATCAATTTACGTTTCTTTTTTACTAAGATGATTTTTTAAAAACTTTAATGGGGCTTTTGGTATTCAGTTGTGGTAGTTAGTGTGGTTTGTTCAAATGGTATTTACAGAATGTTAGATTTTTATTTATTTATTATCTAAAATCTAGCTATAAGATAATTAACTGTGTTTAGTTAAATTAAGTTAAATTTTCTTACAATAATTTCTTTGATAAATCAATATTCAGAAGTAATAAACGCAGCCTAAGACACTGAACTACGTTTTTCTCTTCTCCACAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAGTTAAGTGAATAGCTCAACTATCTGGTTGATTTAATGTCAAACTGTTGTCCTTGTTCCTCCTCCTTACAAATTATAACTGCTGTAATATGTTTACAGATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATACACACACACAGATATATATATTCTCCCCAGATACCTGTTTGTACTTTCTGTTGGTTTATTGGTTTCCTTATGAATTTGTTTTTTGTCCCTTTTGGCCTGAATGTTTATGTGCAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGAGTTATCTTTGGCAACTTTTCCACTTTGTTTCCGTCCTGTTTTGCTTGTAAAGCTAAACTCTTTTTTAATGTCTATTGTATATTGAAATTTTCAAAGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACCACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAGGCTTCACTGTGATGAAGCATTTGACACATCACTAACTTTAGATTAAAGTGATTTG ATGAAATCCCAGCGATGGTGCTTGAAAGACGATCCCGCAATGGCGCTAGGGTGGACAGCAGACACGGACCTCATTATCAGTGCTAGGGTTGAAGGATTAGCAGCGGTGGCGATGAGTTGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGAGTTATCTTTGGCAACTTTTCCACTTTGTTTCCGTCCTGTTTTGCTTGTAAAGCTAAACTCTTTTTTAATGTCTATTGTATATTGAAATTTTCAAAGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACCACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAGGCTTCACTGTGATGAAGCATTTGACACATCACTAACTTTAGATTAAAGTGATTTG ATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGA MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGET
BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 4.3e-08 Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 7.4e-08 Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 1.7e-07 Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1
BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06 Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 1
BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06 Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 1
BLAST of ClCG08G002480 vs. TrEMBL
Match: U5FS44_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11010g PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 6.3e-14 Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1
BLAST of ClCG08G002480 vs. TrEMBL
Match: V4T8S4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002598mg PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13 Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A067GW82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13 Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A067H8R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13 Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13 Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of ClCG08G002480 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)) HSP 1 Score: 81.6 bits (200), Expect = 1.6e-16 Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of ClCG08G002480 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)) HSP 1 Score: 79.0 bits (193), Expect = 1.0e-15 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]) HSP 1 Score: 100.9 bits (250), Expect = 7.1e-19 Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1
BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]) HSP 1 Score: 100.5 bits (249), Expect = 9.3e-19 Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1
BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|1012179668|ref|XP_015967830.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis duranensis]) HSP 1 Score: 84.3 bits (207), Expect = 6.9e-14 Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|1021522408|ref|XP_016204594.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis ipaensis]) HSP 1 Score: 84.3 bits (207), Expect = 6.9e-14 Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1
BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|566200595|ref|XP_006376216.1| (hypothetical protein POPTR_0013s11010g [Populus trichocarpa]) HSP 1 Score: 84.0 bits (206), Expect = 9.0e-14 Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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