Csa4G152270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G152270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 8238952 .. 8239685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATGGACAAAGCTCTTAAGTCTTGAGCTTCCTTCGCTAATTCACAGCAACAGTAATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGATCTCTCCTTCCCATTATTGATCTTCTTTTATTATTTTTCCTTGGTGGGTGTTACGGTTAATATTTCTATAAATTTTAGAAACATATTCCACATATCTAGTAATTTACTTTGCATGAAAATTGTTATTTTTCTTTAACCAATATTTTGTTAAGACTTAAGTTTGAGGTTATAACAAATTAACTAACATTATGAAACTTAATTTGTTGTAAAAAAAAGATTAATTTTGAGTTATAATATGGTAATTGTTTTGAATTAAAGGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGATGTCTCTATATTATTGGATCAACAGATTATCAACCTTACAACCCTACAAATATTAATTTATGATCTTTTTGTTGTTGTTTTGTTTCTATTATGTGTTCGTCTCTGTTGGTCACAATACCCAAATATCTTCTCTTTTATGTGTTCTTCTCTTTATTCTTAATAATTGTTTTCTTTTGCTCTCTCTCGA

mRNA sequence

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Coding sequence (CDS)

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Protein sequence

MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVYDFPWKGGYNPPHNNR*
Homology
[Close]
BLAST of Csa4G152270 vs. TrEMBL
Match: A0A0A0KZM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

[Close]
BLAST of Csa4G152270 vs. NCBI nr
Match: gi|700198664|gb|KGN53822.1| (hypothetical protein Csa_4G152270 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.3e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

The following BLAST results are available for this feature:
BLAST of Csa4G152270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZM0_CUCSA3.7e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1[more]
BLAST of Csa4G152270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198664|gb|KGN53822.1|5.3e-36100.00hypothetical protein Csa_4G152270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099529cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G152270.1Csa4G152270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099529CU099529transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G152270CSPI04G10360Wild cucumber (PI 183967)cpicuB182
Csa4G152270CsGy4G010050Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G152270Melon (DHL92) v3.5.1cumeB331
Csa4G152270Watermelon (Charleston Gray)cuwcgB305
Csa4G152270Cucurbita pepo (Zucchini)cpecuB074
Csa4G152270Bottle gourd (USVL1VR-Ls)culsiB260
Csa4G152270Melon (DHL92) v3.6.1cumedB313
Csa4G152270Silver-seed gourdcarcuB0214
Csa4G152270Watermelon (97103) v2cuwmbB302
Csa4G152270Wax gourdcuwgoB392
Csa4G152270Cucumber (Gy14) v1cgycuB011
Csa4G152270Cucurbita maxima (Rimu)cmacuB673