Csa4G152270.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G152270.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 8238952 .. 8239685 (+)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATGGACAAAGCTCTTAAGTCTTGAGCTTCCTTCGCTAATTCACAGCAACAGTAATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGATCTCTCCTTCCCATTATTGATCTTCTTTTATTATTTTTCCTTGGTGGGTGTTACGGTTAATATTTCTATAAATTTTAGAAACATATTCCACATATCTAGTAATTTACTTTGCATGAAAATTGTTATTTTTCTTTAACCAATATTTTGTTAAGACTTAAGTTTGAGGTTATAACAAATTAACTAACATTATGAAACTTAATTTGTTGTAAAAAAAAGATTAATTTTGAGTTATAATATGGTAATTGTTTTGAATTAAAGGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGATGTCTCTATATTATTGGATCAACAGATTATCAACCTTACAACCCTACAAATATTAATTTATGATCTTTTTGTTGTTGTTTTGTTTCTATTATGTGTTCGTCTCTGTTGGTCACAATACCCAAATATCTTCTCTTTTATGTGTTCTTCTCTTTATTCTTAATAATTGTTTTCTTTTGCTCTCTCTCGA

mRNA sequence

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Coding sequence (CDS)

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Protein sequence

MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVYDFPWKGGYNPPHNNR*
Homology
[Close]
BLAST of Csa4G152270.1 vs. TrEMBL
Match: A0A0A0KZM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

[Close]
BLAST of Csa4G152270.1 vs. NCBI nr
Match: gi|700198664|gb|KGN53822.1| (hypothetical protein Csa_4G152270 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.3e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

The following BLAST results are available for this feature:
BLAST of Csa4G152270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZM0_CUCSA3.7e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1[more]
BLAST of Csa4G152270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198664|gb|KGN53822.1|5.3e-36100.00hypothetical protein Csa_4G152270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G152270Csa4G152270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G152270.1Csa4G152270.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G152270.1.utr5p1Csa4G152270.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G152270.1.cds1Csa4G152270.1.cds1CDS
Csa4G152270.1.cds2Csa4G152270.1.cds2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G152270.1.utr3p1Csa4G152270.1.utr3p1three_prime_UTR