CSPI04G10360 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G10360
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 8486155 .. 8486933 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGCTCTTAAGTCTTGAGCTTCCTTCGCTAATTCCCAGCAACAGTAATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGATCTCTCCTTCCCATTATTGATCTTCTTTTATTATTTTTCCTTGGTGGGTGTTACGGTTAATATTTCTATAAATTTTAGAAACATATTCCACATATCTAGTAGTTTAGTTTGCATGAAAATTGTTATTTTTCTTTAACCAATATTTTGTTAAGAATTAAGTTTGAGGTTATAACAAATTAACTAACATTATGAAACTTAATTTGTTGTAAAAAAAAAGATTAATTTTGAGTTATAATATGGTAATTGTTTTGAATTAAAGGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGATGTCTCTATATTATTGGATCCACAGATTATCAACCTTACAACCCTACAAATATTAATTTATGATCTTTTTGTTGTTGTTTTGTTTCTATTATGTGTTCGTCTCTGTTGGTCACAATACCCAAATATCTTCTCTTTTATGTGTTCTTCTCTTTATTCTTAATAATTGTTTTCTTTTGCTCTCTCTCGATGTTGTTCTCTTTGTTTGTTGTTGTTTGTTTTCTATAAAACATTTTTAATC

mRNA sequence

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Coding sequence (CDS)

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA
Homology
[Close]
BLAST of CSPI04G10360 vs. TrEMBL
Match: A0A0A0KZM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

[Close]
BLAST of CSPI04G10360 vs. NCBI nr
Match: gi|700198664|gb|KGN53822.1| (hypothetical protein Csa_4G152270 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

The following BLAST results are available for this feature:
BLAST of CSPI04G10360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G10360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZM0_CUCSA9.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G152270 PE=4 SV=1[more]
BLAST of CSPI04G10360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G10360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198664|gb|KGN53822.1|1.3e-34100.00hypothetical protein Csa_4G152270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10360.1CSPI04G10360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G10360Csa4G152270Cucumber (Chinese Long) v2cpicuB182
CSPI04G10360CsaV3_4G010510Cucumber (Chinese Long) v3cpicucB213
CSPI04G10360CsGy4G010050Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G10360Bottle gourd (USVL1VR-Ls)cpilsiB259
CSPI04G10360Melon (DHL92) v3.6.1cpimedB315
CSPI04G10360Silver-seed gourdcarcpiB0222
CSPI04G10360Watermelon (97103) v2cpiwmbB311
CSPI04G10360Wax gourdcpiwgoB397
CSPI04G10360Cucumber (Gy14) v1cgycpiB011
CSPI04G10360Cucurbita maxima (Rimu)cmacpiB681
CSPI04G10360Melon (DHL92) v3.5.1cpimeB332
CSPI04G10360Watermelon (Charleston Gray)cpiwcgB320
CSPI04G10360Cucurbita pepo (Zucchini)cpecpiB069