Csa1G660710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G660710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 26641792 .. 26644189 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTAGGGTTTCCATGGGTGAAAAACTTCTTTGAAAGGTTGCTTTGCTAAAAGTCTCGAAAAAAATGTCTTCCATTTCCAATAAAGATCCCTCACATCCTTTATACTTGTCCAGAGCTTTGCAAAAAGTCTCTACAAAATCTCTTCCCTTCTCAAAATAAAGATCCCACACATCCTTGATACTTATCCAGATAGAATAGCAAGGTCGTCGGGTGGTGGTCTCCAATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCAGTAAGTTCTCTATTTTCTTCTATTTTTAGAAACATGCTAAGGTCCCTGTTGTTTATCCTGCATATTTGTATGTTTTTTCTCTATGTAATTCATGTTTTACAAAATTGAATTCCAAATGCAAGAAATTCACATGCTTTCATTGAGGAACTTGATTCTTTCACCTATGACATATACCCTATGCCAGCACAAGGCAAATGAAAACTCTTGTCATTAGAGTTTACTTTGTTCAAGTTTTGGATTTGTTGATACTAAGGTAAGGTTTTTAGTTAGTCTAGTCTTACCTTGTGAGAGTTGATTATTTTAATTGGTTACATGAGACTTTTAGCAATGTTGGACCAAAATTGAAGTCAAACATTATATCTTTGACCCTGAAAGCCTACTCTCCCGTGATAAACATGAGTGTCTTTTGAGTGAATTCGTGAAAAGTGTGCAAAGGTCCTTATTACTAACTCCAAAATATCAGAGGGGTGAAGAAATAGTACCCCAAATACAAGATCATAATATGACCATTAATGGTATATTCTTTAAGCAATTGAAGGTATGTGTGATGAAAAATGATGAGAGAAGAATGTTAGAATGATGTGTACGTACGACAACAATGAGCAAAACCAGTTTTACGAGAAGGTGAATGCATGTTTGATTTATTTAAACACAAGAAAGACAACTGAAAGAATGGTGAAAGATGAGAGGAAGAGGAAGAGAAAGAGGAATAAATAATATGTTATGCAACCTGGGAGAATAGAAAAGAAATCTTGAAGATAGAAACAGTAAAGTTGAGCTCAGAATTCAACCCGGAATGCAAATGCTAAAGCATACTTGCAATTTTCCTGCACTTTCCTAGTCACAGCAAAAGACAATTTTTTATACTTTGAATTCAAATTCAAAATTTTTAAATTAGAAACCAAACACATCTCTGGAAATATACCAACATTATATTGGATAACTTTTGTTCTAAAAACTATTGTTGTTATATATGGAAAGAATAGTATAAAATATATCTAATATATTTCTTTTTCATATTCTAGAAATAATATATAAAAGATTAATGGAAAGAATTATGTAAATATATCCAATAAAGGAATTCATTTATTTCTTACATATAGATATAAAAAAAAAACCCCACAAAAGGATTAAAAATCACATAGAGCAAGCAACACAATGATAATTTAATTTTGAAGGACAAACTCCAAAATAGAAATCTACGAGTTATTTTTTTCAGGGAACAATAATAATTGTTATCAGAAGTTATTCCCAAATTATTTAAAACTTAAGAAATTACTTCCTATGCTGGAAGAAGTTCAAGAATCTAACTTTTGGCAAAGCTTCTCACGTTTCACATCTCATCACCTACAAATCAACATTAAGAAATGAAAAGGTAGGAATGTTAGATTAGGCGCTTTTTCTCAGAACTTACCGAACCGAAATGGCTCGATGCTATAGAAAACTGACTTATTAAAAATGTTAGCATCATAAAAATACACAACATTATTATGGGGTGGGAATTATTATTATTATTATTATTTTTTTACATTGAAGTAAATCATATAAGTTCTATGTCAGCTATATTCATGTTTATCGGTATTGATTACCTGTTGGATCGCGCCTTGCGAGGAACATGCGCAAATGAGGATCGATTGGTAGTCCCATAGATTCATATGTTGGGTCATAAACTGCATTCCTACTTTCTGCTGATGATCTGTTTCCAAATTTCAAATATTCTTTTATCAAACTAATACTATATCTCAAAATCTTTGTTTATATTAAAAATTAGGTCATTTCACATTTCAATATTAATTGCATTTAATACCCTTTAAGCTATTCATAATTAACAAGTCTCTGATATATTATTAGGCACTATTAAAATTTGAAAGGATTTACTGTTACACATTAAACTTGTTCTTTGATCTAAAATAGAATATTTAAGAAGTTAGAGACATGAATTTGATGGTATACCTTGAAGCTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

mRNA sequence

ATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCACTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

Coding sequence (CDS)

ATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCACTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

Protein sequence

MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADSILAVIKNIFI*
Homology
[Close]
BLAST of Csa1G660710 vs. TrEMBL
Match: A0A0A0M0P4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660710 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.2e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60
          MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS
Sbjct: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60

Query: 61 ILAVIKNIFI 71
          ILAVIKNIFI
Sbjct: 61 ILAVIKNIFI 70

[Close]
BLAST of Csa1G660710 vs. NCBI nr
Match: gi|700211606|gb|KGN66702.1| (hypothetical protein Csa_1G660710 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60
          MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS
Sbjct: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60

Query: 61 ILAVIKNIFI 71
          ILAVIKNIFI
Sbjct: 61 ILAVIKNIFI 70

The following BLAST results are available for this feature:
BLAST of Csa1G660710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0P4_CUCSA4.2e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660710 PE=4 SV=1[more]
BLAST of Csa1G660710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211606|gb|KGN66702.1|6.1e-34100.00hypothetical protein Csa_1G660710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU165712cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G660710.1Csa1G660710.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU165712CU165712transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G660710Silver-seed gourdcarcuB0927
Csa1G660710Watermelon (97103) v2cuwmbB035
Csa1G660710Wax gourdcuwgoB090
Csa1G660710Cucumber (Gy14) v1cgycuB500
Csa1G660710Cucurbita maxima (Rimu)cmacuB057
Csa1G660710Cucurbita maxima (Rimu)cmacuB085
Csa1G660710Cucurbita moschata (Rifu)cmocuB075
Csa1G660710Cucurbita moschata (Rifu)cmocuB047
Csa1G660710Melon (DHL92) v3.5.1cumeB043
Csa1G660710Watermelon (Charleston Gray)cuwcgB038
Csa1G660710Watermelon (97103) v1cuwmB011
Csa1G660710Cucurbita pepo (Zucchini)cpecuB349
Csa1G660710Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G660710Bottle gourd (USVL1VR-Ls)culsiB082
Csa1G660710Cucumber (Gy14) v2cgybcuB002
Csa1G660710Melon (DHL92) v3.6.1cumedB035