Csa1G660710.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G660710.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 26641792 .. 26644189 (-)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTAGGGTTTCCATGGGTGAAAAACTTCTTTGAAAGGTTGCTTTGCTAAAAGTCTCGAAAAAAATGTCTTCCATTTCCAATAAAGATCCCTCACATCCTTTATACTTGTCCAGAGCTTTGCAAAAAGTCTCTACAAAATCTCTTCCCTTCTCAAAATAAAGATCCCACACATCCTTGATACTTATCCAGATAGAATAGCAAGGTCGTCGGGTGGTGGTCTCCAATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCAGTAAGTTCTCTATTTTCTTCTATTTTTAGAAACATGCTAAGGTCCCTGTTGTTTATCCTGCATATTTGTATGTTTTTTCTCTATGTAATTCATGTTTTACAAAATTGAATTCCAAATGCAAGAAATTCACATGCTTTCATTGAGGAACTTGATTCTTTCACCTATGACATATACCCTATGCCAGCACAAGGCAAATGAAAACTCTTGTCATTAGAGTTTACTTTGTTCAAGTTTTGGATTTGTTGATACTAAGGTAAGGTTTTTAGTTAGTCTAGTCTTACCTTGTGAGAGTTGATTATTTTAATTGGTTACATGAGACTTTTAGCAATGTTGGACCAAAATTGAAGTCAAACATTATATCTTTGACCCTGAAAGCCTACTCTCCCGTGATAAACATGAGTGTCTTTTGAGTGAATTCGTGAAAAGTGTGCAAAGGTCCTTATTACTAACTCCAAAATATCAGAGGGGTGAAGAAATAGTACCCCAAATACAAGATCATAATATGACCATTAATGGTATATTCTTTAAGCAATTGAAGGTATGTGTGATGAAAAATGATGAGAGAAGAATGTTAGAATGATGTGTACGTACGACAACAATGAGCAAAACCAGTTTTACGAGAAGGTGAATGCATGTTTGATTTATTTAAACACAAGAAAGACAACTGAAAGAATGGTGAAAGATGAGAGGAAGAGGAAGAGAAAGAGGAATAAATAATATGTTATGCAACCTGGGAGAATAGAAAAGAAATCTTGAAGATAGAAACAGTAAAGTTGAGCTCAGAATTCAACCCGGAATGCAAATGCTAAAGCATACTTGCAATTTTCCTGCACTTTCCTAGTCACAGCAAAAGACAATTTTTTATACTTTGAATTCAAATTCAAAATTTTTAAATTAGAAACCAAACACATCTCTGGAAATATACCAACATTATATTGGATAACTTTTGTTCTAAAAACTATTGTTGTTATATATGGAAAGAATAGTATAAAATATATCTAATATATTTCTTTTTCATATTCTAGAAATAATATATAAAAGATTAATGGAAAGAATTATGTAAATATATCCAATAAAGGAATTCATTTATTTCTTACATATAGATATAAAAAAAAAACCCCACAAAAGGATTAAAAATCACATAGAGCAAGCAACACAATGATAATTTAATTTTGAAGGACAAACTCCAAAATAGAAATCTACGAGTTATTTTTTTCAGGGAACAATAATAATTGTTATCAGAAGTTATTCCCAAATTATTTAAAACTTAAGAAATTACTTCCTATGCTGGAAGAAGTTCAAGAATCTAACTTTTGGCAAAGCTTCTCACGTTTCACATCTCATCACCTACAAATCAACATTAAGAAATGAAAAGGTAGGAATGTTAGATTAGGCGCTTTTTCTCAGAACTTACCGAACCGAAATGGCTCGATGCTATAGAAAACTGACTTATTAAAAATGTTAGCATCATAAAAATACACAACATTATTATGGGGTGGGAATTATTATTATTATTATTATTTTTTTACATTGAAGTAAATCATATAAGTTCTATGTCAGCTATATTCATGTTTATCGGTATTGATTACCTGTTGGATCGCGCCTTGCGAGGAACATGCGCAAATGAGGATCGATTGGTAGTCCCATAGATTCATATGTTGGGTCATAAACTGCATTCCTACTTTCTGCTGATGATCTGTTTCCAAATTTCAAATATTCTTTTATCAAACTAATACTATATCTCAAAATCTTTGTTTATATTAAAAATTAGGTCATTTCACATTTCAATATTAATTGCATTTAATACCCTTTAAGCTATTCATAATTAACAAGTCTCTGATATATTATTAGGCACTATTAAAATTTGAAAGGATTTACTGTTACACATTAAACTTGTTCTTTGATCTAAAATAGAATATTTAAGAAGTTAGAGACATGAATTTGATGGTATACCTTGAAGCTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

mRNA sequence

ATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCACTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

Coding sequence (CDS)

ATGGGTTGGAAGGATTTTGTTGTTCGTGCAGAAAAGTATTGGGCTTCAAGTTTTTGGAGAGCAGTTTGGACTTCAAGCCCACTGGAGGTGTGGTCGCATTGCTTAAGACATTGTCTTCAGAGATCCAATTCCTTGGGAGGTGAAGATTTGAAGATGATGGCAGCTCATCTTGCAGATTCAATCTTGGCTGTTATAAAAAATATATTTATATAA

Protein sequence

MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADSILAVIKNIFI*
Homology
[Close]
BLAST of Csa1G660710.1 vs. TrEMBL
Match: A0A0A0M0P4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660710 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.2e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60
          MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS
Sbjct: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60

Query: 61 ILAVIKNIFI 71
          ILAVIKNIFI
Sbjct: 61 ILAVIKNIFI 70

[Close]
BLAST of Csa1G660710.1 vs. NCBI nr
Match: gi|700211606|gb|KGN66702.1| (hypothetical protein Csa_1G660710 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60
          MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS
Sbjct: 1  MGWKDFVVRAEKYWASSFWRAVWTSSPLEVWSHCLRHCLQRSNSLGGEDLKMMAAHLADS 60

Query: 61 ILAVIKNIFI 71
          ILAVIKNIFI
Sbjct: 61 ILAVIKNIFI 70

The following BLAST results are available for this feature:
BLAST of Csa1G660710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0P4_CUCSA4.2e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660710 PE=4 SV=1[more]
BLAST of Csa1G660710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211606|gb|KGN66702.1|6.1e-34100.00hypothetical protein Csa_1G660710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G660710Csa1G660710gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G660710.1Csa1G660710.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G660710.1.cds2Csa1G660710.1.cds2CDS
Csa1G660710.1.cds1Csa1G660710.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G660710.1.utr5p1Csa1G660710.1.utr5p1five_prime_UTR