Csa1G172580 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G172580
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative defensin-like protein 165; contains IPR010851 (S locus-related glycoprotein 1 binding pollen coat)
LocationChr1 : 10675569 .. 10675949 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACCTACATTGTGGTGCTTGTGGTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Protein sequence

MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTCG*
Homology
[Close]
BLAST of Csa1G172580 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]
BLAST of Csa1G172580 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]
BLAST of Csa1G172580 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]
BLAST of Csa1G172580 vs. TrEMBL
Match: A0A0A0KU45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-06
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M K   S       +++ A I +P G  A +C+  LY+ GC   DC QKC +K+  +S +
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWI-MPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSE 60

Query: 61 CIPTDPDQTIYACYCFYTC 80
          C+   P    Y+CYCFY C
Sbjct: 61 CVAVPPIPFHYSCYCFYDC 77

[Close]
BLAST of Csa1G172580 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]
BLAST of Csa1G172580 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1 

Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]
BLAST of Csa1G172580 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]
BLAST of Csa1G172580 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L  +    + LII+V+ + +PQ     +CQ++L+  GC L DC ++C+EKH+E    
Sbjct: 2  MANLSFNNFFILFLIISVSSM-VPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGV 61

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIP    +  Y+CYCF+TCG
Sbjct: 62 CIPNQAKED-YSCYCFWTCG 79

[Close]
BLAST of Csa1G172580 vs. NCBI nr
Match: gi|743907321|ref|XP_011047085.1| (PREDICTED: putative defensin-like protein 165 [Populus euphratica])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA--------RCQDILYNSGCTLADCGQKCWE 60
          M K+  +    + LI +V  ++ P  A           RC++ILY  GCTL +CG+KC+E
Sbjct: 2  MAKISFTLFFILALIFSVTTMAPPVSATVVTGKETEQRRCEEILYRKGCTLLECGKKCYE 61

Query: 61 KHHE--ASRQCIPTDPDQTIYACYCFYTC 80
          K+     + +CI ++ + T YACYCF+ C
Sbjct: 62 KYMNKGGNGKCI-SNAEMTRYACYCFWNC 89

The following BLAST results are available for this feature:
BLAST of Csa1G172580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVZ5_CUCSA1.4e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1[more]
A0A0A0L2R3_CUCSA4.2e-2264.47Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1[more]
A0A0A0KYP7_CUCSA2.7e-1651.90Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1[more]
A0A0A0KU45_CUCSA2.5e-0636.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1[more]
BLAST of Csa1G172580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209891|gb|KGN64987.1|2.0e-41100.00hypothetical protein Csa_1G172580 [Cucumis sativus][more]
gi|700199739|gb|KGN54897.1|6.1e-2264.47hypothetical protein Csa_4G576870 [Cucumis sativus][more]
gi|700199652|gb|KGN54810.1|3.8e-1651.90hypothetical protein Csa_4G507400 [Cucumis sativus][more]
gi|802775625|ref|XP_012090834.1|7.0e-1040.00PREDICTED: defensin-like protein 156 [Jatropha curcas][more]
gi|743907321|ref|XP_011047085.1|1.5e-0735.96PREDICTED: putative defensin-like protein 165 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G172580.1Csa1G172580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 31..79
score: 5.