CSPI01G15260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 10852800 .. 10853173 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACATACATTGTGGTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

Homology

[Close]

BLAST of CSPI01G15260 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.9e-40
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIPTDPDQTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of CSPI01G15260 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISVPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYNCG 81
          +P QTIYACYCF++CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of CSPI01G15260 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI VPQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYNC 80
          CI TDP  T YACYCFYNC
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of CSPI01G15260 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 8.4e-40
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIPTDPDQTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of CSPI01G15260 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISVPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYNCG 81
          +P QTIYACYCF++CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of CSPI01G15260 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 6.5e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI VPQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYNC 80
          CI TDP  T YACYCFYNC
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of CSPI01G15260 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L  +    + LII+V+ + VPQ     +CQ++L+  GC L DC ++C+EKH+E    
Sbjct: 2  MANLSFNNFFILFLIISVSSM-VPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGV 61

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIP    +  Y+CYCF+ CG
Sbjct: 62 CIPNQAKED-YSCYCFWTCG 79

[Close]

BLAST of CSPI01G15260 vs. NCBI nr
Match: gi|743907321|ref|XP_011047085.1| (PREDICTED: putative defensin-like protein 165 [Populus euphratica])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAA--------RCQDILYNSGCTLADCGQKCWE 60
          M K+  +    + LI +V  ++ P  A           RC++ILY  GCTL +CG+KC+E
Sbjct: 2  MAKISFTLFFILALIFSVTTMAPPVSATVVTGKETEQRRCEEILYRKGCTLLECGKKCYE 61

Query: 61 KHHE--ASRQCIPTDPDQTIYACYCFYNC 80
          K+     + +CI ++ + T YACYCF+NC
Sbjct: 62 KYMNKGGNGKCI-SNAEMTRYACYCFWNC 89

The following BLAST results are available for this feature:

BLAST of CSPI01G15260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVZ5_CUCSA	5.9e-40	97.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1	[more]
A0A0A0L2R3_CUCSA	9.4e-22	64.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1	[more]
A0A0A0KYP7_CUCSA	4.5e-16	54.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1	[more]

BLAST of CSPI01G15260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209891\|gb\|KGN64987.1\|	8.4e-40	97.50	hypothetical protein Csa_1G172580 [Cucumis sativus]	[more]
gi\|700199739\|gb\|KGN54897.1\|	1.4e-21	64.47	hypothetical protein Csa_4G576870 [Cucumis sativus]	[more]
gi\|700199652\|gb\|KGN54810.1\|	6.5e-16	54.43	hypothetical protein Csa_4G507400 [Cucumis sativus]	[more]
gi\|802775625\|ref\|XP_012090834.1\|	2.2e-08	40.00	PREDICTED: defensin-like protein 156 [Jatropha curcas]	[more]
gi\|743907321\|ref\|XP_011047085.1\|	2.5e-07	37.08	PREDICTED: putative defensin-like protein 165 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15260.1	CSPI01G15260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 29..79 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15260	Csa1G172580	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15260	CsaV3_1G015430	Cucumber (Chinese Long) v3	cpicucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15260	Wax gourd	cpiwgoB036
CSPI01G15260	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15260	Wild cucumber (PI 183967)	cpicpiB049
CSPI01G15260	Cucumber (Gy14) v1	cgycpiB017
CSPI01G15260	Cucumber (Gy14) v1	cgycpiB482
CSPI01G15260	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15260	Cucurbita maxima (Rimu)	cmacpiB222
CSPI01G15260	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15260	Cucurbita moschata (Rifu)	cmocpiB208
CSPI01G15260	Cucurbita moschata (Rifu)	cmocpiB395
CSPI01G15260	Cucumber (Chinese Long) v2	cpicuB049
CSPI01G15260	Melon (DHL92) v3.5.1	cpimeB017
CSPI01G15260	Melon (DHL92) v3.5.1	cpimeB030
CSPI01G15260	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15260	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15260	Watermelon (Charleston Gray)	cpiwcgB030
CSPI01G15260	Watermelon (97103) v1	cpiwmB044
CSPI01G15260	Watermelon (97103) v1	cpiwmB050
CSPI01G15260	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15260	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15260	Cucurbita pepo (Zucchini)	cpecpiB514
CSPI01G15260	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15260	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15260	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15260	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G15260	Melon (DHL92) v3.6.1	cpimedB017
CSPI01G15260	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G15260	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15260	Silver-seed gourd	carcpiB0435
CSPI01G15260	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15260	Watermelon (97103) v2	cpiwmbB005
CSPI01G15260	Watermelon (97103) v2	cpiwmbB009