CSPI01G15260.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15260.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 10852800 .. 10853173 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACATACATTGTGGTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCGGTACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATAATTGTGGTTAA

Homology

[Close]

BLAST of CSPI01G15260.1 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.9e-40
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIPTDPDQTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of CSPI01G15260.1 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISVPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYNCG 81
          +P QTIYACYCF++CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of CSPI01G15260.1 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI VPQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYNC 80
          CI TDP  T YACYCFYNC
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of CSPI01G15260.1 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 8.4e-40
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMIS+PQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIPTDPDQTIYACYCFY CG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of CSPI01G15260.1 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISVPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYNCG 81
          +P QTIYACYCF++CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of CSPI01G15260.1 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 6.5e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI VPQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYNC 80
          CI TDP  T YACYCFYNC
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of CSPI01G15260.1 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L  +    + LII+V+ + VPQ     +CQ++L+  GC L DC ++C+EKH+E    
Sbjct: 2  MANLSFNNFFILFLIISVSSM-VPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGV 61

Query: 61 CIPTDPDQTIYACYCFYNCG 81
          CIP    +  Y+CYCF+ CG
Sbjct: 62 CIPNQAKED-YSCYCFWTCG 79

[Close]

BLAST of CSPI01G15260.1 vs. NCBI nr
Match: gi|743907321|ref|XP_011047085.1| (PREDICTED: putative defensin-like protein 165 [Populus euphratica])

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-07
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISVPQGALAA--------RCQDILYNSGCTLADCGQKCWE 60
          M K+  +    + LI +V  ++ P  A           RC++ILY  GCTL +CG+KC+E
Sbjct: 2  MAKISFTLFFILALIFSVTTMAPPVSATVVTGKETEQRRCEEILYRKGCTLLECGKKCYE 61

Query: 61 KHHE--ASRQCIPTDPDQTIYACYCFYNC 80
          K+     + +CI ++ + T YACYCF+NC
Sbjct: 62 KYMNKGGNGKCI-SNAEMTRYACYCFWNC 89

The following BLAST results are available for this feature:

BLAST of CSPI01G15260.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15260.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVZ5_CUCSA	5.9e-40	97.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1	[more]
A0A0A0L2R3_CUCSA	9.4e-22	64.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1	[more]
A0A0A0KYP7_CUCSA	4.5e-16	54.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1	[more]

BLAST of CSPI01G15260.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G15260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209891\|gb\|KGN64987.1\|	8.4e-40	97.50	hypothetical protein Csa_1G172580 [Cucumis sativus]	[more]
gi\|700199739\|gb\|KGN54897.1\|	1.4e-21	64.47	hypothetical protein Csa_4G576870 [Cucumis sativus]	[more]
gi\|700199652\|gb\|KGN54810.1\|	6.5e-16	54.43	hypothetical protein Csa_4G507400 [Cucumis sativus]	[more]
gi\|802775625\|ref\|XP_012090834.1\|	2.2e-08	40.00	PREDICTED: defensin-like protein 156 [Jatropha curcas]	[more]
gi\|743907321\|ref\|XP_011047085.1\|	2.5e-07	37.08	PREDICTED: putative defensin-like protein 165 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G15260	CSPI01G15260	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G15260.1	CSPI01G15260.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G15260.1.cds2	CSPI01G15260.1.cds2	CDS
CSPI01G15260.1.cds1	CSPI01G15260.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 29..79 score: 1.