CsaV3_1G015430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr1 : 10968735 .. 10969378 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACCTACATTGTGGTGCTTGTGGTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAAAATTTGATTTTGAGATGTTTCTCGTTTAGTCTATGCATTGGACATAGACTAAGTAACAATTTGTAATAAAATTGGGTTTACAGCTCCAAAGGTGATGACTTATTGAATTTTTAAAAGAGAAATTGCATCATAAGGCAAAAACATTTTTTAAAAAATAGCCCATGTCATATCTTTTTTTGCATATTGCGAATATGACAAATATGACAAGTAATTAGTGATATCACACGGCTATCAGATGACTATAAGTATACTCACGTACTTTG

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Protein sequence

MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTCG
Homology
[Close]
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-09
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 1  MTKLYSSWILTIVLIIAVAMI--SIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEAS 60
          M+K      + +VLI +VA+   ++ Q     RCQ++LY S CTL DCG+KC+ KHH+  
Sbjct: 1  MSKFSFVHFILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQG 60

Query: 61 RQCIPTDPDQTIYACYCFYTC 80
            CI  +P  T YACYC Y C
Sbjct: 61 HTCI-ANPAGTDYACYCIYNC 80

[Close]
BLAST of CsaV3_1G015430 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 15 IIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACY 74
          +I++AM    Q     RCQ ILY  GCTL DC +KC++K      QCIPT+  QTIY C 
Sbjct: 19 VISMAMPVAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECL 78

Query: 75 CFYTC 80
          C Y C
Sbjct: 79 CVYNC 83

[Close]
BLAST of CsaV3_1G015430 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]
BLAST of CsaV3_1G015430 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.6e-21
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]
BLAST of CsaV3_1G015430 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.1e-15
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]
BLAST of CsaV3_1G015430 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 15 IIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACY 74
          +I++AM    Q     RCQ ILY  GCTL DC +KC++K      QCIPT+  QTIY C 
Sbjct: 19 VISMAMPVAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECL 78

Query: 75 CFYTC 80
          C Y C
Sbjct: 79 CVYNC 83

[Close]
BLAST of CsaV3_1G015430 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.9e-09
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 31 RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTC 80
          RCQ ILY  GCTL DC +KC++K      QCIPT+  QTIY C C Y C
Sbjct: 34 RCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64987.14.3e-40100.00hypothetical protein Csa_1G172580 [Cucumis sativus][more]
KGN54897.11.0e-2064.47hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN54810.11.1e-1451.90hypothetical protein Csa_4G507400 [Cucumis sativus][more]
XP_018498384.12.3e-0944.44PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri][more]
OMO95288.13.0e-0949.23S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
BLAST of CsaV3_1G015430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA2.9e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA6.6e-2164.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA7.1e-1551.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI2.0e-0949.23S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP9.9e-0957.14S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015430.1CsaV3_1G015430.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 31..79
e-value: 5.9E-7
score: 29.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015430CSPI01G15260Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015430Watermelon (97103) v2cucwmbB008
CsaV3_1G015430Wax gourdcucwgoB039
CsaV3_1G015430Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015430Cucumber (Gy14) v2cgybcucB002
CsaV3_1G015430Cucumber (Gy14) v1cgycucB496
CsaV3_1G015430Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015430Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015430Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015430Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015430Cucurbita moschata (Rifu)cmocucB0472
CsaV3_1G015430Cucurbita pepo (Zucchini)cpecucB0632
CsaV3_1G015430Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015430Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015430Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015430Bottle gourd (USVL1VR-Ls)cuclsiB044
CsaV3_1G015430Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015430Melon (DHL92) v3.5.1cucmeB029
CsaV3_1G015430Melon (DHL92) v3.6.1cucmedB015
CsaV3_1G015430Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G015430Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015430Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015430Watermelon (97103) v1cucwmB049
CsaV3_1G015430Watermelon (97103) v1cucwmB064