Csa1G172580.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G172580.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative defensin-like protein 165; contains IPR010851 (S locus-related glycoprotein 1 binding pollen coat)
Location	Chr1 : 10675569 .. 10675949 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGGTTCTCTTCTACTTCTGAATTATGTATAACTATTGCCAGCATCCATATGATCCATATGATGTACATTTTTTAAATGAAAAATACCATATTTATAGTGGCTAAGTATATTTCACCTACATTGTGGTGCTTGTGGTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

mRNA sequence

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Coding sequence (CDS)

ATGACAAAGCTTTATTCCTCTTGGATCCTCACCATTGTTCTTATCATTGCAGTTGCAATGATTTCAATACCTCAAGGAGCCTTAGCTGCTCGATGTCAAGACATATTGTATAATAGTGGATGCACACTTGCTGATTGTGGGCAAAAATGTTGGGAGAAGCACCATGAGGCCTCACGTCAATGCATACCAACTGATCCTGACCAAACTATCTATGCTTGTTATTGTTTCTATACTTGTGGTTAA

Protein sequence

MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYACYCFYTCG*

Homology

[Close]

BLAST of Csa1G172580.1 vs. TrEMBL
Match: A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of Csa1G172580.1 vs. TrEMBL
Match: A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of Csa1G172580.1 vs. TrEMBL
Match: A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of Csa1G172580.1 vs. TrEMBL
Match: A0A0A0KU45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-06
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M K   S       +++ A I +P G  A +C+  LY+ GC   DC QKC +K+  +S +
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWI-MPNGVSATKCETKLYD-GCLPKDCTQKCSDKYPNSSSE 60

Query: 61 CIPTDPDQTIYACYCFYTC 80
          C+   P    Y+CYCFY C
Sbjct: 61 CVAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of Csa1G172580.1 vs. NCBI nr
Match: gi|700209891|gb|KGN64987.1| (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIPTDPDQTIYACYCFYTCG
Sbjct: 61 CIPTDPDQTIYACYCFYTCG 80

[Close]

BLAST of Csa1G172580.1 vs. NCBI nr
Match: gi|700199739|gb|KGN54897.1| (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65
          SS I+   LI AVA++   Q   AA RCQD+LYN+GC L DCG+KCWEKHH  S QCIPT
Sbjct: 3  SSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPT 62

Query: 66 DPDQTIYACYCFYTCG 81
          +P QTIYACYCF+ CG
Sbjct: 63 NPSQTIYACYCFFDCG 78

[Close]

BLAST of Csa1G172580.1 vs. NCBI nr
Match: gi|700199652|gb|KGN54810.1| (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L S  +  I++I AV+MI +PQG  A +CQD LY  GC   +CGQKC + HH  + +
Sbjct: 18 MANLSSFRVAIIIVIFAVSMILVPQGTSALKCQDRLYVGGCIQHECGQKCSQLHHGGTSK 77

Query: 61 CIPTDPDQTIYACYCFYTC 80
          CI TDP  T YACYCFY C
Sbjct: 78 CISTDPTFTKYACYCFYNC 96

[Close]

BLAST of Csa1G172580.1 vs. NCBI nr
Match: gi|802775625|ref|XP_012090834.1| (PREDICTED: defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEASRQ 60
          M  L  +    + LII+V+ + +PQ     +CQ++L+  GC L DC ++C+EKH+E    
Sbjct: 2  MANLSFNNFFILFLIISVSSM-VPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGV 61

Query: 61 CIPTDPDQTIYACYCFYTCG 81
          CIP    +  Y+CYCF+TCG
Sbjct: 62 CIPNQAKED-YSCYCFWTCG 79

[Close]

BLAST of Csa1G172580.1 vs. NCBI nr
Match: gi|743907321|ref|XP_011047085.1| (PREDICTED: putative defensin-like protein 165 [Populus euphratica])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAA--------RCQDILYNSGCTLADCGQKCWE 60
          M K+  +    + LI +V  ++ P  A           RC++ILY  GCTL +CG+KC+E
Sbjct: 2  MAKISFTLFFILALIFSVTTMAPPVSATVVTGKETEQRRCEEILYRKGCTLLECGKKCYE 61

Query: 61 KHHE--ASRQCIPTDPDQTIYACYCFYTC 80
          K+     + +CI ++ + T YACYCF+ C
Sbjct: 62 KYMNKGGNGKCI-SNAEMTRYACYCFWNC 89

The following BLAST results are available for this feature:

BLAST of Csa1G172580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVZ5_CUCSA	1.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172580 PE=4 SV=1	[more]
A0A0A0L2R3_CUCSA	4.2e-22	64.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G576870 PE=4 SV=1	[more]
A0A0A0KYP7_CUCSA	2.7e-16	51.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507400 PE=4 SV=1	[more]
A0A0A0KU45_CUCSA	2.5e-06	36.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G634350 PE=4 SV=1	[more]

BLAST of Csa1G172580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209891\|gb\|KGN64987.1\|	2.0e-41	100.00	hypothetical protein Csa_1G172580 [Cucumis sativus]	[more]
gi\|700199739\|gb\|KGN54897.1\|	6.1e-22	64.47	hypothetical protein Csa_4G576870 [Cucumis sativus]	[more]
gi\|700199652\|gb\|KGN54810.1\|	3.8e-16	51.90	hypothetical protein Csa_4G507400 [Cucumis sativus]	[more]
gi\|802775625\|ref\|XP_012090834.1\|	7.0e-10	40.00	PREDICTED: defensin-like protein 156 [Jatropha curcas]	[more]
gi\|743907321\|ref\|XP_011047085.1\|	1.5e-07	35.96	PREDICTED: putative defensin-like protein 165 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G172580	Csa1G172580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G172580.1	Csa1G172580.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G172580.1.cds2	Csa1G172580.1.cds2	CDS
Csa1G172580.1.cds1	Csa1G172580.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 31..79 score: 5.