MELO3C019265 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019265
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	High mobility group B protein 1
Location	chr11 : 10205254 .. 10207143 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGTAATCTTCTTCTTCACGATCATTTTCAGCTTCTTCTTTTTGCTTTTCATCTCCAATATGTTCTTACATTCTCTTGTTTCTATTTCTTTATGTAAGTTTTTACTTTCTGTACGATTCGTTTCTTTGCTTTTTGTAGTTTCTCTTCAACTTCGATTCTATGCAATCTTCATCTCTGTATTTTTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATATTCTTTTGTAATGTTTCGCGGCTTTGTTCGTTCCTAATTGAGTTGAATTTTACAGCCTGCGTTGTGTAATTCTTGTATGTTTTTAGTAGTTTGCTTTCCTATTTCGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTACTGATATTATTCATTTATTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATATACTAAATTGAATATACTCCTAAAGCTTTTATCCAATTTGCTATTACGTTTTCTTGTTATATAGATATACGATTTTTATCATTATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGTAAATATAATTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCTTACATTCTAGTTTTTCTTAGATTTGTCCATTCTGATTTCGATTTCTTGTTTTGGAAATGATAGGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACGTTCTTATTATTCCTCCATATTTATGTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTGCGATTTCTTATTTTGGTACTATTTTCGTAGAACACTAATTCGAGACTATCAACAATAAACGATTAAGGAATAAGATTGGAGGTTTTTAGTTCTTCCACTTTAATTGAAGATAGTAACACGTTTTGTTCTCGGTATTCAATTCGAGACTAATTGTCGATGCAAATATGTGGAACTTGTGTTTCTCTTCCTCAGGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCGTAATTAACTTGTTCCCACTCTCTCTCTCCTTTCAGTCTTTCTCCTTCACTTCGTCAGAACATCACCAAGGTTTTATTTATCACCGAATCTCTCTTCTCTCTAACATCTCCTGGTTGACAGAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

mRNA sequence

ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

Coding sequence (CDS)

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS*

Homology

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BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

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BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 12  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVG 71
           K  N   +K++ A+ K TK   KD N PKRP +AFFVFME+FR  +KE+ P+ K+  VVG
Sbjct: 9   KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68

Query: 72  KAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKST 131
           KAGG+KWK ++ AEKAP+  KA KRK EYE  L+AY N       AE E     ES KS 
Sbjct: 69  KAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY-NKKQAAGAAEEE-----ESDKSR 128

Query: 132 SEVNDDTEQEASS 145
           SEVNDD E +  S
Sbjct: 129 SEVNDDDEDQDGS 135

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BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-27
Identity = 65/127 (51.18%), Postives = 77/127 (60.63%), Query Frame = 1


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137
           WKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES KS SEVND+
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDE 133

Query: 138 TEQEASS 145
            + E  S
Sbjct: 134 DDAEDGS 134

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BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 1


Query: 8   VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAG 67
           +  +KK  A K ++   + K+ K    D N PKRP +AFFVFMEEFR +F ++ P+ KA 
Sbjct: 17  LAVNKKGAATKARKPAGKGKAAK----DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 76

Query: 68  PVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT-- 127
             VGKA G KWK+MSDAEKAPY  K+ KRK EYE  + AY          + + E PT  
Sbjct: 77  SAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN---------KKQAEGPTGG 136

Query: 128 ---ESQKSTSEVNDDTEQEASS 145
              ES+KS SEVND+ + E  S
Sbjct: 137 DEEESEKSVSEVNDEDDDEEGS 145

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BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

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BLAST of MELO3C019265 vs. TrEMBL
Match: B9SDW3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

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BLAST of MELO3C019265 vs. TrEMBL
Match: A0A067EHU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 86/152 (56.58%), Postives = 105/152 (69.08%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKS---KKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+  R   V  KKP+A  LK RKAE K  K    KKKD NAPKRP +A+F+FME+FR  F
Sbjct: 1   MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSF 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYT 120
           KE FPD K+   +GKAGG+KWKSMS+AEKAPY +KAL +KAEYE+ALEAYK   N N   
Sbjct: 61  KESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAG 120

Query: 121 VAEPELEMPTESQ---KSTSEVNDDTEQEASS 145
           V+E   +  +E Q    S+SE+ND+ EQE SS
Sbjct: 121 VSEDSWKSTSEVQSGKSSSSEINDEAEQEFSS 152

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BLAST of MELO3C019265 vs. TrEMBL
Match: W9RDH1_9ROSA (High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKA---EMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           MR  + A + HKKP+ + LK+ KA   + K  K+ KK+ +APKRPA+AFFVFMEEFR  +
Sbjct: 1   MRGPKTAAIAHKKPDVEILKKSKAGATKTKKEKASKKNSDAPKRPASAFFVFMEEFRKSY 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE +PD K+  VVGKAGGEKWKSMSDA+KAPY EKA KRKAEYE ALEAYK         
Sbjct: 61  KENYPDVKSVAVVGKAGGEKWKSMSDADKAPYVEKASKRKAEYEKALEAYKK-----LHG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 147
               E P ES+KS SEV++ +     ++S
Sbjct: 121 NGGDEKPEESEKSGSEVHEGSGDSGENNS 144

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BLAST of MELO3C019265 vs. TrEMBL
Match: A0A0D6R4H7_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           ++  ++  +  +KP  +K  Q K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+
Sbjct: 14  LKQTQDKKIGKRKPPTEK--QLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEK 73

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAE 120
            P+ K+  VVGKAGGEKWKSMS+ EKAPY  KA K+KAEYE  + AYKN    N    AE
Sbjct: 74  HPNTKSVSVVGKAGGEKWKSMSEGEKAPYEAKAAKKKAEYEKTMAAYKNKQEGNAEEAAE 133

Query: 121 PELEMPTESQKSTSEVNDDTE 140
                  ES KS SEVND+ E
Sbjct: 134 -------ESDKSKSEVNDEEE 145

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BLAST of MELO3C019265 vs. TrEMBL
Match: A0A0C9S804_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWK 79
           KQ K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+ P+ K+  VVGKAGGEKWK
Sbjct: 31  KQLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEKHPNTKSVSVVGKAGGEKWK 90

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAEPELEMPTESQKSTSEVNDD 139
           SMS+ EKAPY  KA K+KAEYE ++ AYKN    N    AE       ES KS SEVND+
Sbjct: 91  SMSEGEKAPYEAKAAKKKAEYEKSMAAYKNKQEGNVEEAAE-------ESDKSKSEVNDE 145

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BLAST of MELO3C019265 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

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BLAST of MELO3C019265 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

[Close]

BLAST of MELO3C019265 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAY 108
           WKS+SD+EKAPY  KA KRK EYE  ++AY
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103

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BLAST of MELO3C019265 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 17  QKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGE 76
           Q+LK R    K+ K  KKD N PKRP +AFFVF+E+FR  F    P+ K+   VGKA G 
Sbjct: 15  QRLKTRGR--KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGA 74

Query: 77  KWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVND 136
           +WK+M+D +KAPY  KA  RK EY   ++ Y       T  E +     +S KS SEV++
Sbjct: 75  RWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED-----DSDKSKSEVDE 132

Query: 137 DTEQE 142
              +E
Sbjct: 135 AVSEE 132

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BLAST of MELO3C019265 vs. TAIR10
Match: AT5G23420.1 (AT5G23420.1 high-mobility group box 6)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 1


Query: 10  THKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPV 69
           T   P  ++LK+   E KS+ +  K    PKRP TAFF+FM +FR  FK +   + A   
Sbjct: 90  TSDGPKPKRLKKTNDEKKSSSTSNK----PKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA 149

Query: 70  VGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEA----------YKNNFNCYTVAEP 129
             K GGEKWKS+++ EK  Y +KA + KAEY  +LE+           K + +     E 
Sbjct: 150 A-KIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDEEKQSDDVDDAEEK 209

Query: 130 ELEMPTESQKSTSEVNDDTEQEA 143
           +++   E ++   E  DD ++EA
Sbjct: 210 QVDDDDEVEEKEVENTDDDKKEA 227

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BLAST of MELO3C019265 vs. NCBI nr
Match: gi|659111708|ref|XP_008455870.1| (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
           LEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of MELO3C019265 vs. NCBI nr
Match: gi|659111706|ref|XP_008455869.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-74
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 120
           FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 147
           CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of MELO3C019265 vs. NCBI nr
Match: gi|802732116|ref|XP_012086327.1| (PREDICTED: high mobility group B protein 3-like [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-40
Identity = 94/151 (62.25%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK-------KDQNAPKRPATAFFVFMEEF 60
           M+A R AV++HKK +A+KLK RK E K+ K K        KD +APKRP TAFFVFME F
Sbjct: 1   MKAPRPAVISHKKLDAEKLKARKVETKTPKEKTSKKNSAPKDPDAPKRPPTAFFVFMEGF 60

Query: 61  RMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNC 120
           R  FKE FP+ K+   VGKAGGEKWKSMSD+EKAPYAEKALK+KAEYE A+EAYK   N 
Sbjct: 61  RKSFKENFPNNKSVSTVGKAGGEKWKSMSDSEKAPYAEKALKKKAEYEKAVEAYKKKQN- 120

Query: 121 YTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
                 ++E   ES+KSTSEV+DD EQEASS
Sbjct: 121 ---YNGDIEKSEESEKSTSEVHDDAEQEASS 147

[Close]

BLAST of MELO3C019265 vs. NCBI nr
Match: gi|1009128229|ref|XP_015881117.1| (PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba])

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 90/147 (61.22%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEM---KSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+A + AV+ HKKP+A+ LK+RKAEM   K  K+ KK  +APKRPATAFF+FMEEFR   
Sbjct: 1   MKAPKAAVIAHKKPDAEMLKKRKAEMITMKKKKASKKSSDAPKRPATAFFIFMEEFRKTL 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE  PD K+GP VGKAGGEKWKSMSD+EKA Y EKALKRKAEYE ALEAYK         
Sbjct: 61  KENNPDIKSGPAVGKAGGEKWKSMSDSEKALYIEKALKRKAEYEKALEAYKK-----LNG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASS 145
           + + E    S+KSTSEV+D  E+  SS
Sbjct: 121 KGDDEKAESSEKSTSEVHDGEEEAESS 142

[Close]

BLAST of MELO3C019265 vs. NCBI nr
Match: gi|255566393|ref|XP_002524182.1| (PREDICTED: HMG1/2-like protein [Ricinus communis])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

The following BLAST results are available for this feature:

BLAST of MELO3C019265 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGB1_ARATH	2.1e-28	52.76	High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1	[more]
HMGL_IPONI	7.9e-28	51.88	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGB3_ARATH	6.7e-27	51.18	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGL_SOYBN	1.1e-24	46.48	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGB2_ARATH	3.1e-24	52.17	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]

BLAST of MELO3C019265 vs. TrEMBL


Match Name	E-value	Identity	Description
B9SDW3_RICCO	1.3e-37	59.24	DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=...	[more]
A0A067EHU0_CITSI	1.2e-35	56.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1	[more]
W9RDH1_9ROSA	3.9e-34	55.03	High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1	[more]
A0A0D6R4H7_ARACU	2.7e-27	51.06	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A0C9S804_9SPER	4.6e-27	57.38	TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence O...	[more]

BLAST of MELO3C019265 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51880.2	1.2e-29	52.76	high mobility group B1	[more]
AT1G20693.1	1.7e-25	52.17	high mobility group B2	[more]
AT1G20696.2	1.5e-24	58.89	high mobility group B3	[more]
AT2G17560.1	1.4e-19	43.20	high mobility group B4	[more]
AT5G23420.1	1.6e-15	34.97	high-mobility group box 6	[more]

BLAST of MELO3C019265 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111708\|ref\|XP_008455870.1\|	4.6e-76	100.00	PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]	[more]
gi\|659111706\|ref\|XP_008455869.1\|	7.3e-74	94.81	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
gi\|802732116\|ref\|XP_012086327.1\|	6.9e-40	62.25	PREDICTED: high mobility group B protein 3-like [Jatropha curcas]	[more]
gi\|1009128229\|ref\|XP_015881117.1\|	4.9e-38	61.22	PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba]	[more]
gi\|255566393\|ref\|XP_002524182.1\|	1.9e-37	59.24	PREDICTED: HMG1/2-like protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU51075	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019265T1	MELO3C019265T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU51075	MU51075	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 37..110 score: 9.5
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 score: 6.2
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 score: 1.6
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 39..108 score: 17
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 30..111 score: 6.81
None	No IPR available	unknown	Coil	Coil	coord: 16..36 score: -coord: 90..110 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 34..144 score: 1.2
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 34..144 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019265	Cla010476	Watermelon (97103) v1	mewmB124
MELO3C019265	ClCG02G008680	Watermelon (Charleston Gray)	mewcgB090
MELO3C019265	Cla97C02G035200	Watermelon (97103) v2	mewmbB092
MELO3C019265	Bhi10G001122	Wax gourd	mewgoB126
MELO3C019265	CmaCh02G001700	Cucurbita maxima (Rimu)	cmameB533
MELO3C019265	CmoCh02G001730	Cucurbita moschata (Rifu)	cmomeB523
MELO3C019265	Lsi10G001370	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C019265	Cp4.1LG05g14290	Cucurbita pepo (Zucchini)	cpemeB667
MELO3C019265	CsGy2G026000	Cucumber (Gy14) v2	cgybmeB083
MELO3C019265	Carg03134	Silver-seed gourd	carmeB0341
MELO3C019265	Carg13528	Silver-seed gourd	carmeB0030
MELO3C019265	CsaV3_2G034980	Cucumber (Chinese Long) v3	cucmeB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019265	Cucurbita moschata (Rifu)	cmomeB080
MELO3C019265	Cucurbita moschata (Rifu)	cmomeB443
MELO3C019265	Cucurbita moschata (Rifu)	cmomeB482
MELO3C019265	Cucurbita moschata (Rifu)	cmomeB768
MELO3C019265	Wild cucumber (PI 183967)	cpimeB096
MELO3C019265	Wild cucumber (PI 183967)	cpimeB445
MELO3C019265	Wild cucumber (PI 183967)	cpimeB520
MELO3C019265	Cucumber (Chinese Long) v2	cumeB097
MELO3C019265	Cucumber (Chinese Long) v2	cumeB454
MELO3C019265	Cucumber (Chinese Long) v2	cumeB516
MELO3C019265	Watermelon (Charleston Gray)	mewcgB086
MELO3C019265	Watermelon (Charleston Gray)	mewcgB092
MELO3C019265	Watermelon (97103) v1	mewmB103
MELO3C019265	Watermelon (97103) v1	mewmB130
MELO3C019265	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C019265	Cucurbita pepo (Zucchini)	cpemeB599
MELO3C019265	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C019265	Cucumber (Gy14) v2	cgybmeB395
MELO3C019265	Cucumber (Gy14) v2	cgybmeB452
MELO3C019265	Silver-seed gourd	carmeB0863
MELO3C019265	Cucumber (Chinese Long) v3	cucmeB457
MELO3C019265	Cucumber (Chinese Long) v3	cucmeB532
MELO3C019265	Watermelon (97103) v2	mewmbB083
MELO3C019265	Wax gourd	mewgoB107
MELO3C019265	Wax gourd	mewgoB140
MELO3C019265	Melon (DHL92) v3.5.1	memeB039
MELO3C019265	Melon (DHL92) v3.5.1	memeB057
MELO3C019265	Cucumber (Gy14) v1	cgymeB014
MELO3C019265	Cucumber (Gy14) v1	cgymeB072
MELO3C019265	Cucumber (Gy14) v1	cgymeB246
MELO3C019265	Cucurbita maxima (Rimu)	cmameB087
MELO3C019265	Cucurbita maxima (Rimu)	cmameB451
MELO3C019265	Cucurbita maxima (Rimu)	cmameB502