MU51075 (transcribed_cluster) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MU51075
Type	transcribed_cluster
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Unknown protein
Location	chr11 : 10205090 .. 10207144 (+)
Sequence length	952

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGAACTAAGAATTTTTTTTCCCTTTATCCATACGAAATTTAAAACGGAAATTCAAGATATGCAACCCCAATAATCTCAAGAGAATTGAGTTCACCAACCAGAGCAGTACATAGAATATATATACATATGATCCAAAGAAATATTTTGTCCTAAAATTGTTAAGAGTTGTGCAAATTCTAGCCTTCCATTCGACTCCCTTTACTTGCTAACTTTCGTCCTCATAACCATGAAACTTTTATTTAAAAAGATATGGAGATTGATCTGTTACCTGTAATGGACATTCAAGTCCTGCAGAAATCTTGGCAGAAGATATACAAAAACAAATATAAGCTTTTAGCCGTAGTAATAAAATCAAACATCTATAGTTTAACTAAAAGGAACAATGGGAGAAGATAATGCATATGAATTTGTATGCATGTTTTGGATTGGATAACTACCTAAGAGCTAGAGCTAGCTTCCTGCTCTGTTTCATCATTGACCTCAGAGGTTGATTTTTGTGATTCTGTTGGCATTTCGAGTTCAGGTTCAGCCACCGTGTAGCAATTGAAATTGTTCTTGTATGCTTCAAGAGCTATTTCATATTCTGCCTTTCTTTTCAAAGCTTTTTCAGCGTACGGAGCTTTTTCAGCATCAGACATGGACTTCCATTTCTCACCACCAGCTTTGCCGACCACTGGACCAGCTTTTGCATCAGGAAATTGCTCCTTGAACATCATTCTAAATTCCTCCATGAAAACGAAGAATGCCGTAGCTGGACGTTTTGGAGCATTTTGATCTTTCTTCTTACTTTTCGTGGATTTCATTTCAGCTTTTCTCTGCTTCAGCTTCTGTGCGTTGGGTTTCTTGTGAGTGACGACGGCGTTTCTGAGAGCTCTCATGGTGATTCTGTAGAATTAGGAGAGAGGCGCAGAGAAGGAAAAGGGAGAGTGATGGAATTCAATTCCTTTAAGTT

Library


Library category	ESTs
melon VFLP2 library	3

Homology

[Close]

BLAST of MU51075 vs. Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-12
Identity = 48/127 (37.80%), Postives = 53/127 (41.73%), Query Frame = -3


Query: 462 KPNAQKLKQRKAEMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXX 521
           K  A   K  K E         D N PKR  +A                P+         
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 522 XXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 581
              +KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 582 EVNDETE 641
           E+NDE E
Sbjct: 147 EINDEDE 144

Query: 642  701
           
Sbjct: 207  144

Query: 702  761
           
Sbjct: 267  144

Query: 762  821
           
Sbjct: 327  144

Query: 822  843
           
Sbjct: 387  144

[Close]

BLAST of MU51075 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.5e-11
Identity = 43/110 (39.09%), Postives = 49/110 (44.55%), Query Frame = -3


Query: 447 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 506
           D N PKRPA+A                P             +KWKS+SD+EKAPY  KA 
Sbjct: 34  DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93

Query: 507 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASS 566
           KRK EYE  ++AY          E   +   ES KS SEVNDE + E  S
Sbjct: 94  KRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

Query: 567  626
           
Sbjct: 154  137

Query: 627  686
           
Sbjct: 214  137

Query: 687  746
           
Sbjct: 274  137

Query: 747  777
           
Sbjct: 334  137

[Close]

BLAST of MU51075 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-11
Identity = 43/110 (39.09%), Postives = 49/110 (44.55%), Query Frame = -3


Query: 447 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 506
           D N PKRP++A                P             EKWKS+SD+EKAPY  KA 
Sbjct: 31  DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90

Query: 507 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASS 566
           KRK EYE  ++AY          E   +   ES KS SEVNDE + E  S
Sbjct: 91  KRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 134

Query: 567  626
           
Sbjct: 151  134

Query: 627  686
           
Sbjct: 211  134

Query: 687  746
           
Sbjct: 271  134

Query: 747  777
           
Sbjct: 331  134

[Close]

BLAST of MU51075 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-10
Identity = 44/115 (38.26%), Postives = 51/115 (44.35%), Query Frame = -3


Query: 447 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 506
           D N PKRP +A                P+             KWK+MSDAEKAPY  K+ 
Sbjct: 40  DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSE 99

Query: 507 KRKAEYEIALEAYKNNFNCYTVAEPELEMPT-----ESQKSTSEVNDETEQEASS 566
           KRK EYE  + AY          + + E PT     ES+KS SEVNDE + E  S
Sbjct: 100 KRKVEYEKNMRAYN---------KKQAEGPTGGDEEESEKSVSEVNDEDDDEEGS 145

Query: 567  626
           
Sbjct: 160  145

Query: 627  686
           
Sbjct: 220  145

Query: 687  746
           
Sbjct: 280  145

Query: 747  777
           
Sbjct: 340  145

[Close]

BLAST of MU51075 vs. Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-10
Identity = 41/107 (38.32%), Postives = 48/107 (44.86%), Query Frame = -3


Query: 456 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 515
           D N PKRP +A                P+            E+WKS+S+ EKAPY ++AL
Sbjct: 41  DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRAL 100

Query: 516 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQE 575
           K+K EYEI L+AY          E        S KS SEVNDE E E
Sbjct: 101 KKKEEYEITLQAYNKKLEGKDDEE-------GSDKSKSEVNDEDEDE 140

Query: 576  635
           
Sbjct: 161  140

Query: 636  695
           
Sbjct: 221  140

Query: 696  755
           
Sbjct: 281  140

Query: 756  777
           
Sbjct: 341  140

[Close]

BLAST of MU51075 vs. TrEMBL
Match: B9SDW3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 69/157 (43.95%), Postives = 83/157 (52.87%), Query Frame = -3


Query: 447 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXX---------DQNAPKRPATAXXXXXX 506
           M+  RNAV+  KKP+++ LK RKAE                  D +APKRPA+A      
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 507 XXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 566
                     PD            EKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 567 -NNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASS 626
            NN N       + E   ES+KSTSEVN++ EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

Query: 627  686
           
Sbjct: 181  155

Query: 687  746
           
Sbjct: 241  155

Query: 747  806
           
Sbjct: 301  155

Query: 807  866
           
Sbjct: 361  155

Query: 867  879
           
Sbjct: 421  155

[Close]

BLAST of MU51075 vs. TrEMBL
Match: A0A067EHU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 66/152 (43.42%), Postives = 79/152 (51.97%), Query Frame = -3


Query: 447 MRALRNAVVTHKKPNAQKLKQRKAE---MXXXXXXXXDQNAPKRPATAXXXXXXXXXXXX 506
           M+  R   V  KKP+A  LK RKAE            D NAPKRP +A            
Sbjct: 1   MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSF 60

Query: 507 XXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYT 566
               PD            +KWKSMS+AEKAPY +KAL +KAEYE+ALEAYK   N N   
Sbjct: 61  KESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAG 120

Query: 567 VAEPELEMPTESQ---KSTSEVNDETEQEASS 626
           V+E   +  +E Q    S+SE+NDE EQE SS
Sbjct: 121 VSEDSWKSTSEVQSGKSSSSEINDEAEQEFSS 152

Query: 627  686
           
Sbjct: 181  152

Query: 687  746
           
Sbjct: 241  152

Query: 747  806
           
Sbjct: 301  152

Query: 807  866
           
Sbjct: 361  152

Query: 867  879
           
Sbjct: 421  152

[Close]

BLAST of MU51075 vs. TrEMBL
Match: W9RDH1_9ROSA (High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 59/149 (39.60%), Postives = 75/149 (50.34%), Query Frame = -3


Query: 441 MRALRNAVVTHKKPNAQKLKQRKA---EMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXX 500
           MR  + A + HKKP+ + LK+ KA   +         + +APKRPA+A            
Sbjct: 1   MRGPKTAAIAHKKPDVEILKKSKAGATKTKKEKASKKNSDAPKRPASAFFVFMEEFRKSY 60

Query: 501 XXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 560
               PD            EKWKSMSDA+KAPY EKA KRKAEYE ALEAYK         
Sbjct: 61  KENYPDVKSVAVVGKAGGEKWKSMSDADKAPYVEKASKRKAEYEKALEAYKK-----LHG 120

Query: 561 EPELEMPTESQKSTSEVNDETEQEASSSS 620
               E P ES+KS SEV++ +     ++S
Sbjct: 121 NGGDEKPEESEKSGSEVHEGSGDSGENNS 144

Query: 621  680
           
Sbjct: 181  144

Query: 681  740
           
Sbjct: 241  144

Query: 741  800
           
Sbjct: 301  144

Query: 801  860
           
Sbjct: 361  144

Query: 861  879
           
Sbjct: 421  144

[Close]

BLAST of MU51075 vs. TrEMBL
Match: A0A078GU73_BRANA (BnaC07g32570D protein OS=Brassica napus GN=BnaC07g32570D PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 50/137 (36.50%), Postives = 59/137 (43.07%), Query Frame = -3


Query: 444 VTHKKPNAQKLKQRKAEMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXX 503
           V  +K   +K    K E         D N PKR  +A                P+     
Sbjct: 20  VDDRKVGKRKAPAEKGETRKEKKAKKDPNKPKRAPSAFFVFLEDFRTTFKKDNPNVKAVS 79

Query: 504 XXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQ 563
                  +KWKSMS  EKAPY EKA KRKAEYE  ++AY  N           E   ES+
Sbjct: 80  AVGKAAGQKWKSMSQDEKAPYEEKAAKRKAEYEKLMDAYNKNLE---------EGSDESE 139

Query: 564 KSTSEVNDETEQEASSS 623
           KS SEVNDE E E  +S
Sbjct: 140 KSRSEVNDEDEDEDEAS 147

Query: 624  683
           
Sbjct: 200  147

Query: 684  743
           
Sbjct: 260  147

Query: 744  803
           
Sbjct: 320  147

Query: 804  855
           
Sbjct: 380  147

[Close]

BLAST of MU51075 vs. TrEMBL
Match: E3UKG5_GOSHI (High mobility group box 4 protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.7e-11
Identity = 46/112 (41.07%), Postives = 55/112 (49.11%), Query Frame = -3


Query: 441 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 500
           D N PKRPA+A                P             EKWKS+SDAEKAPY  KA 
Sbjct: 35  DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAE 94

Query: 501 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASSSS 560
           KRK EYE  ++AY         AE   E  +ES+KS SEVNDE +++    S
Sbjct: 95  KRKVEYEKNMKAYTKR-----QAEAPKEEESESEKSVSEVNDEEDEDDEEGS 141

Query: 561  620
           
Sbjct: 155  141

Query: 621  680
           
Sbjct: 215  141

Query: 681  740
           
Sbjct: 275  141

Query: 741  777
           
Sbjct: 335  141

[Close]

BLAST of MU51075 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-13
Identity = 48/127 (37.80%), Postives = 53/127 (41.73%), Query Frame = -3


Query: 462 KPNAQKLKQRKAEMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXX 521
           K  A   K  K E         D N PKR  +A                P+         
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 522 XXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 581
              +KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 582 EVNDETE 641
           E+NDE E
Sbjct: 147 EINDEDE 144

Query: 642  701
           
Sbjct: 207  144

Query: 702  761
           
Sbjct: 267  144

Query: 762  821
           
Sbjct: 327  144

Query: 822  843
           
Sbjct: 387  144

[Close]

BLAST of MU51075 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-12
Identity = 43/110 (39.09%), Postives = 49/110 (44.55%), Query Frame = -3


Query: 447 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 506
           D N PKRPA+A                P             +KWKS+SD+EKAPY  KA 
Sbjct: 34  DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93

Query: 507 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASS 566
           KRK EYE  ++AY          E   +   ES KS SEVNDE + E  S
Sbjct: 94  KRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

Query: 567  626
           
Sbjct: 154  137

Query: 627  686
           
Sbjct: 214  137

Query: 687  746
           
Sbjct: 274  137

Query: 747  777
           
Sbjct: 334  137

[Close]

BLAST of MU51075 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-08
Identity = 30/73 (41.10%), Postives = 34/73 (46.58%), Query Frame = -3


Query: 558 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 617
           D N PKRP++A                P             EKWKS+SD+EKAPY  KA 
Sbjct: 31  DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90

Query: 618 KRKAEYEIALEAY 677
           KRK EYE  ++AY
Sbjct: 91  KRKVEYEKNMKAY 103

Query: 678  737
           
Sbjct: 151  103

Query: 738  777
           
Sbjct: 211  103

[Close]

BLAST of MU51075 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06
Identity = 32/107 (29.91%), Postives = 43/107 (40.19%), Query Frame = -3


Query: 456 DQNAPKRPATAXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKAL 515
           D N PKRP +A                P+             +WK+M+D +KAPY  KA 
Sbjct: 31  DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90

Query: 516 KRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDETEQE 575
            RK EY   ++ Y       T  E +     +S KS SEV++   +E
Sbjct: 91  SRKTEYIKNVQQYNLKLASGTNREED-----DSDKSKSEVDEAVSEE 132

Query: 576  635
           
Sbjct: 151  132

Query: 636  695
           
Sbjct: 211  132

Query: 696  755
           
Sbjct: 271  132

Query: 756  777
           
Sbjct: 331  132

[Close]

BLAST of MU51075 vs. NCBI nr
Match: gi|659111708|ref|XP_008455870.1| (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 9.6e-47
Identity = 109/146 (74.66%), Postives = 110/146 (75.34%), Query Frame = -3


Query: 441 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXXXXX 500
           MRALRNAVVTHKKPNAQKLKQRKAEM        DQNAPKRPATA               
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 501 XPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 560
            PD            EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 561 LEMPTESQKSTSEVNDETEQEASSSS 620
           LEMPTESQKSTSEVND+TEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

Query: 621  680
           
Sbjct: 181  146

Query: 681  740
           
Sbjct: 241  146

Query: 741  800
           
Sbjct: 301  146

Query: 801  860
           
Sbjct: 361  146

Query: 861  879
           
Sbjct: 421  146

[Close]

BLAST of MU51075 vs. NCBI nr
Match: gi|659111706|ref|XP_008455869.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 109/154 (70.78%), Postives = 110/154 (71.43%), Query Frame = -3


Query: 441 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXXDQNAPKRPATAXXXXXXXXXXXXXXX 500
           MRALRNAVVTHKKPNAQKLKQRKAEM        DQNAPKRPATA               
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 501 XPDXXXXXXXXXXXXEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 560
            PD            EKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 561 CYTVAEPELEMPTESQKSTSEVNDETEQEASSSS 620
           CYTVAEPELEMPTESQKSTSEVND+TEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

Query: 621  680
           
Sbjct: 181  154

Query: 681  740
           
Sbjct: 241  154

Query: 741  800
           
Sbjct: 301  154

Query: 801  860
           
Sbjct: 361  154

Query: 861  879
           
Sbjct: 421  154

[Close]

BLAST of MU51075 vs. NCBI nr
Match: gi|802732116|ref|XP_012086327.1| (PREDICTED: high mobility group B protein 3-like [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-19
Identity = 70/151 (46.36%), Postives = 85/151 (56.29%), Query Frame = -3


Query: 447 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXXDQN-------APKRPATAXXXXXXXX 506
           M+A R AV++HKK +A+KLK RK E          +N       APKRP TA        
Sbjct: 1   MKAPRPAVISHKKLDAEKLKARKVETKTPKEKTSKKNSAPKDPDAPKRPPTAFFVFMEGF 60

Query: 507 XXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNC 566
                   P+            EKWKSMSD+EKAPYAEKALK+KAEYE A+EAYK   N 
Sbjct: 61  RKSFKENFPNNKSVSTVGKAGGEKWKSMSDSEKAPYAEKALKKKAEYEKAVEAYKKKQN- 120

Query: 567 YTVAEPELEMPTESQKSTSEVNDETEQEASS 626
                 ++E   ES+KSTSEV+D+ EQEASS
Sbjct: 121 ---YNGDIEKSEESEKSTSEVHDDAEQEASS 147

Query: 627  686
           
Sbjct: 181  147

Query: 687  746
           
Sbjct: 241  147

Query: 747  806
           
Sbjct: 301  147

Query: 807  866
           
Sbjct: 361  147

Query: 867  879
           
Sbjct: 421  147

[Close]

BLAST of MU51075 vs. NCBI nr
Match: gi|255566393|ref|XP_002524182.1| (PREDICTED: HMG1/2-like protein [Ricinus communis])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 69/157 (43.95%), Postives = 83/157 (52.87%), Query Frame = -3


Query: 447 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXX---------DQNAPKRPATAXXXXXX 506
           M+  RNAV+  KKP+++ LK RKAE                  D +APKRPA+A      
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 507 XXXXXXXXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 566
                     PD            EKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 567 -NNFNCYTVAEPELEMPTESQKSTSEVNDETEQEASS 626
            NN N       + E   ES+KSTSEVN++ EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

Query: 627  686
           
Sbjct: 181  155

Query: 687  746
           
Sbjct: 241  155

Query: 747  806
           
Sbjct: 301  155

Query: 807  866
           
Sbjct: 361  155

Query: 867  879
           
Sbjct: 421  155

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BLAST of MU51075 vs. NCBI nr
Match: gi|1009128229|ref|XP_015881117.1| (PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 67/147 (45.58%), Postives = 81/147 (55.10%), Query Frame = -3


Query: 447 MRALRNAVVTHKKPNAQKLKQRKAEMXXXXXXXXDQ---NAPKRPATAXXXXXXXXXXXX 506
           M+A + AV+ HKKP+A+ LK+RKAEM         +   +APKRPATA            
Sbjct: 1   MKAPKAAVIAHKKPDAEMLKKRKAEMITMKKKKASKKSSDAPKRPATAFFIFMEEFRKTL 60

Query: 507 XXXXPDXXXXXXXXXXXXEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 566
               PD            EKWKSMSD+EKA Y EKALKRKAEYE ALEAYK         
Sbjct: 61  KENNPDIKSGPAVGKAGGEKWKSMSDSEKALYIEKALKRKAEYEKALEAYKK-----LNG 120

Query: 567 EPELEMPTESQKSTSEVNDETEQEASS 626
           + + E    S+KSTSEV+D  E+  SS
Sbjct: 121 KGDDEKAESSEKSTSEVHDGEEEAESS 142

Query: 627  686
           
Sbjct: 181  142

Query: 687  746
           
Sbjct: 241  142

Query: 747  806
           
Sbjct: 301  142

Query: 807  866
           
Sbjct: 361  142

Query: 867  879
           
Sbjct: 421  142

The following BLAST results are available for this feature:

BLAST of MU51075 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGB1_ARATH	3.4e-12	37.80	High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1	[more]
HMGB2_ARATH	6.5e-11	39.09	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]
HMGB3_ARATH	8.4e-11	39.09	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGL_SOYBN	1.1e-10	38.26	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGL_VICFA	1.4e-10	38.32	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]

BLAST of MU51075 vs. TrEMBL


Match Name	E-value	Identity	Description
B9SDW3_RICCO	1.2e-19	43.95	DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=...	[more]
A0A067EHU0_CITSI	1.3e-18	43.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1	[more]
W9RDH1_9ROSA	1.0e-15	39.60	High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1	[more]
A0A078GU73_BRANA	4.5e-11	36.50	BnaC07g32570D protein OS=Brassica napus GN=BnaC07g32570D PE=4 SV=1	[more]
E3UKG5_GOSHI	7.7e-11	41.07	High mobility group box 4 protein OS=Gossypium hirsutum PE=2 SV=1	[more]

BLAST of MU51075 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51880.2	1.9e-13	37.80	high mobility group B1	[more]
AT1G20693.1	3.6e-12	39.09	high mobility group B2	[more]
AT1G20696.2	4.2e-08	41.10	high mobility group B3	[more]
AT2G17560.1	3.0e-06	29.91	high mobility group B4	[more]

BLAST of MU51075 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111708\|ref\|XP_008455870.1\|	9.6e-47	74.66	PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]	[more]
gi\|659111706\|ref\|XP_008455869.1\|	1.5e-44	70.78	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
gi\|802732116\|ref\|XP_012086327.1\|	4.9e-19	46.36	PREDICTED: high mobility group B protein 3-like [Jatropha curcas]	[more]
gi\|255566393\|ref\|XP_002524182.1\|	1.3e-16	43.95	PREDICTED: HMG1/2-like protein [Ricinus communis]	[more]
gi\|1009128229\|ref\|XP_015881117.1\|	1.8e-16	45.58	PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019265	MELO3C019265	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
GA33YL21RM1	GA33YL21RM1	EST
GA34YH15FM1	GA34YH15FM1	EST
GA34YH15RM1	GA34YH15RM1	EST

InterPro

Analysis Name: InterPro Annotations of melon unigene v4
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 37..110 score: 9.5
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 score: 6.2
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 score: 1.6
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 39..108 score: 17
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 30..111 score: 6.81
None	No IPR available	unknown	Coil	Coil	coord: 16..36 score: -coord: 90..110 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 34..144 score: 1.1
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 34..144 score: 1.1