MELO3C019265 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019265
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHigh mobility group B protein 1
Locationchr11 : 10205254 .. 10207143 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGTAATCTTCTTCTTCACGATCATTTTCAGCTTCTTCTTTTTGCTTTTCATCTCCAATATGTTCTTACATTCTCTTGTTTCTATTTCTTTATGTAAGTTTTTACTTTCTGTACGATTCGTTTCTTTGCTTTTTGTAGTTTCTCTTCAACTTCGATTCTATGCAATCTTCATCTCTGTATTTTTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATATTCTTTTGTAATGTTTCGCGGCTTTGTTCGTTCCTAATTGAGTTGAATTTTACAGCCTGCGTTGTGTAATTCTTGTATGTTTTTAGTAGTTTGCTTTCCTATTTCGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTACTGATATTATTCATTTATTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATATACTAAATTGAATATACTCCTAAAGCTTTTATCCAATTTGCTATTACGTTTTCTTGTTATATAGATATACGATTTTTATCATTATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGTAAATATAATTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCTTACATTCTAGTTTTTCTTAGATTTGTCCATTCTGATTTCGATTTCTTGTTTTGGAAATGATAGGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACGTTCTTATTATTCCTCCATATTTATGTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTGCGATTTCTTATTTTGGTACTATTTTCGTAGAACACTAATTCGAGACTATCAACAATAAACGATTAAGGAATAAGATTGGAGGTTTTTAGTTCTTCCACTTTAATTGAAGATAGTAACACGTTTTGTTCTCGGTATTCAATTCGAGACTAATTGTCGATGCAAATATGTGGAACTTGTGTTTCTCTTCCTCAGGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCGTAATTAACTTGTTCCCACTCTCTCTCTCCTTTCAGTCTTTCTCCTTCACTTCGTCAGAACATCACCAAGGTTTTATTTATCACCGAATCTCTCTTCTCTCTAACATCTCCTGGTTGACAGAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

mRNA sequence

ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

Coding sequence (CDS)

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS*
Homology
[Close]
BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1 

Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]
BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 1 

Query: 12  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVG 71
           K  N   +K++ A+ K TK   KD N PKRP +AFFVFME+FR  +KE+ P+ K+  VVG
Sbjct: 9   KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68

Query: 72  KAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKST 131
           KAGG+KWK ++ AEKAP+  KA KRK EYE  L+AY N       AE E     ES KS 
Sbjct: 69  KAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY-NKKQAAGAAEEE-----ESDKSR 128

Query: 132 SEVNDDTEQEASS 145
           SEVNDD E +  S
Sbjct: 129 SEVNDDDEDQDGS 135

[Close]
BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-27
Identity = 65/127 (51.18%), Postives = 77/127 (60.63%), Query Frame = 1 

Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137
           WKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES KS SEVND+
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDE 133

Query: 138 TEQEASS 145
            + E  S
Sbjct: 134 DDAEDGS 134

[Close]
BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 1 

Query: 8   VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAG 67
           +  +KK  A K ++   + K+ K    D N PKRP +AFFVFMEEFR +F ++ P+ KA 
Sbjct: 17  LAVNKKGAATKARKPAGKGKAAK----DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 76

Query: 68  PVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT-- 127
             VGKA G KWK+MSDAEKAPY  K+ KRK EYE  + AY          + + E PT  
Sbjct: 77  SAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN---------KKQAEGPTGG 136

Query: 128 ---ESQKSTSEVNDDTEQEASS 145
              ES+KS SEVND+ + E  S
Sbjct: 137 DEEESEKSVSEVNDEDDDEEGS 145

[Close]
BLAST of MELO3C019265 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

[Close]
BLAST of MELO3C019265 vs. TrEMBL
Match: B9SDW3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

[Close]
BLAST of MELO3C019265 vs. TrEMBL
Match: A0A067EHU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 86/152 (56.58%), Postives = 105/152 (69.08%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKS---KKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+  R   V  KKP+A  LK RKAE K  K    KKKD NAPKRP +A+F+FME+FR  F
Sbjct: 1   MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSF 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYT 120
           KE FPD K+   +GKAGG+KWKSMS+AEKAPY +KAL +KAEYE+ALEAYK   N N   
Sbjct: 61  KESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAG 120

Query: 121 VAEPELEMPTESQ---KSTSEVNDDTEQEASS 145
           V+E   +  +E Q    S+SE+ND+ EQE SS
Sbjct: 121 VSEDSWKSTSEVQSGKSSSSEINDEAEQEFSS 152

[Close]
BLAST of MELO3C019265 vs. TrEMBL
Match: W9RDH1_9ROSA (High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKA---EMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           MR  + A + HKKP+ + LK+ KA   + K  K+ KK+ +APKRPA+AFFVFMEEFR  +
Sbjct: 1   MRGPKTAAIAHKKPDVEILKKSKAGATKTKKEKASKKNSDAPKRPASAFFVFMEEFRKSY 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE +PD K+  VVGKAGGEKWKSMSDA+KAPY EKA KRKAEYE ALEAYK         
Sbjct: 61  KENYPDVKSVAVVGKAGGEKWKSMSDADKAPYVEKASKRKAEYEKALEAYKK-----LHG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 147
               E P ES+KS SEV++ +     ++S
Sbjct: 121 NGGDEKPEESEKSGSEVHEGSGDSGENNS 144

[Close]
BLAST of MELO3C019265 vs. TrEMBL
Match: A0A0D6R4H7_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           ++  ++  +  +KP  +K  Q K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+
Sbjct: 14  LKQTQDKKIGKRKPPTEK--QLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEK 73

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAE 120
            P+ K+  VVGKAGGEKWKSMS+ EKAPY  KA K+KAEYE  + AYKN    N    AE
Sbjct: 74  HPNTKSVSVVGKAGGEKWKSMSEGEKAPYEAKAAKKKAEYEKTMAAYKNKQEGNAEEAAE 133

Query: 121 PELEMPTESQKSTSEVNDDTE 140
                  ES KS SEVND+ E
Sbjct: 134 -------ESDKSKSEVNDEEE 145

[Close]
BLAST of MELO3C019265 vs. TrEMBL
Match: A0A0C9S804_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWK 79
           KQ K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+ P+ K+  VVGKAGGEKWK
Sbjct: 31  KQLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEKHPNTKSVSVVGKAGGEKWK 90

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAEPELEMPTESQKSTSEVNDD 139
           SMS+ EKAPY  KA K+KAEYE ++ AYKN    N    AE       ES KS SEVND+
Sbjct: 91  SMSEGEKAPYEAKAAKKKAEYEKSMAAYKNKQEGNVEEAAE-------ESDKSKSEVNDE 145

[Close]
BLAST of MELO3C019265 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1 

Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]
BLAST of MELO3C019265 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1 

Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

[Close]
BLAST of MELO3C019265 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAY 108
           WKS+SD+EKAPY  KA KRK EYE  ++AY
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103

[Close]
BLAST of MELO3C019265 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1 

Query: 17  QKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGE 76
           Q+LK R    K+ K  KKD N PKRP +AFFVF+E+FR  F    P+ K+   VGKA G 
Sbjct: 15  QRLKTRGR--KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGA 74

Query: 77  KWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVND 136
           +WK+M+D +KAPY  KA  RK EY   ++ Y       T  E +     +S KS SEV++
Sbjct: 75  RWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED-----DSDKSKSEVDE 132

Query: 137 DTEQE 142
              +E
Sbjct: 135 AVSEE 132

[Close]
BLAST of MELO3C019265 vs. TAIR10
Match: AT5G23420.1 (AT5G23420.1 high-mobility group box 6)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 1 

Query: 10  THKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPV 69
           T   P  ++LK+   E KS+ +  K    PKRP TAFF+FM +FR  FK +   + A   
Sbjct: 90  TSDGPKPKRLKKTNDEKKSSSTSNK----PKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA 149

Query: 70  VGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEA----------YKNNFNCYTVAEP 129
             K GGEKWKS+++ EK  Y +KA + KAEY  +LE+           K + +     E 
Sbjct: 150 A-KIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDEEKQSDDVDDAEEK 209

Query: 130 ELEMPTESQKSTSEVNDDTEQEA 143
           +++   E ++   E  DD ++EA
Sbjct: 210 QVDDDDEVEEKEVENTDDDKKEA 227

[Close]
BLAST of MELO3C019265 vs. NCBI nr
Match: gi|659111708|ref|XP_008455870.1| (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
           LEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]
BLAST of MELO3C019265 vs. NCBI nr
Match: gi|659111706|ref|XP_008455869.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-74
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 120
           FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 147
           CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]
BLAST of MELO3C019265 vs. NCBI nr
Match: gi|802732116|ref|XP_012086327.1| (PREDICTED: high mobility group B protein 3-like [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-40
Identity = 94/151 (62.25%), Postives = 110/151 (72.85%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK-------KDQNAPKRPATAFFVFMEEF 60
           M+A R AV++HKK +A+KLK RK E K+ K K        KD +APKRP TAFFVFME F
Sbjct: 1   MKAPRPAVISHKKLDAEKLKARKVETKTPKEKTSKKNSAPKDPDAPKRPPTAFFVFMEGF 60

Query: 61  RMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNC 120
           R  FKE FP+ K+   VGKAGGEKWKSMSD+EKAPYAEKALK+KAEYE A+EAYK   N 
Sbjct: 61  RKSFKENFPNNKSVSTVGKAGGEKWKSMSDSEKAPYAEKALKKKAEYEKAVEAYKKKQN- 120

Query: 121 YTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
                 ++E   ES+KSTSEV+DD EQEASS
Sbjct: 121 ---YNGDIEKSEESEKSTSEVHDDAEQEASS 147

[Close]
BLAST of MELO3C019265 vs. NCBI nr
Match: gi|1009128229|ref|XP_015881117.1| (PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba])

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 90/147 (61.22%), Postives = 106/147 (72.11%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEM---KSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+A + AV+ HKKP+A+ LK+RKAEM   K  K+ KK  +APKRPATAFF+FMEEFR   
Sbjct: 1   MKAPKAAVIAHKKPDAEMLKKRKAEMITMKKKKASKKSSDAPKRPATAFFIFMEEFRKTL 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE  PD K+GP VGKAGGEKWKSMSD+EKA Y EKALKRKAEYE ALEAYK         
Sbjct: 61  KENNPDIKSGPAVGKAGGEKWKSMSDSEKALYIEKALKRKAEYEKALEAYKK-----LNG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASS 145
           + + E    S+KSTSEV+D  E+  SS
Sbjct: 121 KGDDEKAESSEKSTSEVHDGEEEAESS 142

[Close]
BLAST of MELO3C019265 vs. NCBI nr
Match: gi|255566393|ref|XP_002524182.1| (PREDICTED: HMG1/2-like protein [Ricinus communis])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1 

Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

The following BLAST results are available for this feature:
BLAST of MELO3C019265 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGB1_ARATH2.1e-2852.76High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1[more]
HMGL_IPONI7.9e-2851.88HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGB3_ARATH6.7e-2751.18High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1[more]
HMGL_SOYBN1.1e-2446.48HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGB2_ARATH3.1e-2452.17High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1[more]
BLAST of MELO3C019265 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SDW3_RICCO1.3e-3759.24DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=... [more]
A0A067EHU0_CITSI1.2e-3556.58Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1[more]
W9RDH1_9ROSA3.9e-3455.03High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1[more]
A0A0D6R4H7_ARACU2.7e-2751.06Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1[more]
A0A0C9S804_9SPER4.6e-2757.38TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence O... [more]
BLAST of MELO3C019265 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G51880.21.2e-2952.76 high mobility group B1[more]
AT1G20693.11.7e-2552.17 high mobility group B2[more]
AT1G20696.21.5e-2458.89 high mobility group B3[more]
AT2G17560.11.4e-1943.20 high mobility group B4[more]
AT5G23420.11.6e-1534.97 high-mobility group box 6[more]
BLAST of MELO3C019265 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111708|ref|XP_008455870.1|4.6e-76100.00PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo][more]
gi|659111706|ref|XP_008455869.1|7.3e-7494.81PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo][more]
gi|802732116|ref|XP_012086327.1|6.9e-4062.25PREDICTED: high mobility group B protein 3-like [Jatropha curcas][more]
gi|1009128229|ref|XP_015881117.1|4.9e-3861.22PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba][more]
gi|255566393|ref|XP_002524182.1|1.9e-3759.24PREDICTED: HMG1/2-like protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU51075melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019265T1MELO3C019265T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU51075MU51075transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainGENE3DG3DSA:1.10.30.10coord: 37..110
score: 9.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 39..108
score: 6.2
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 38..109
score: 1.6
IPR009071High mobility group box domainPROFILEPS50118HMG_BOX_2coord: 39..108
score: 17
IPR009071High mobility group box domainunknownSSF47095HMG-boxcoord: 30..111
score: 6.81
NoneNo IPR availableunknownCoilCoilcoord: 16..36
score: -coord: 90..110
scor
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 34..144
score: 1.2
NoneNo IPR availablePANTHERPTHR13711:SF223HIGH MOBILITY GROUP B PROTEIN 2-RELATEDcoord: 34..144
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019265Cla010476Watermelon (97103) v1mewmB124
MELO3C019265ClCG02G008680Watermelon (Charleston Gray)mewcgB090
MELO3C019265Cla97C02G035200Watermelon (97103) v2mewmbB092
MELO3C019265Bhi10G001122Wax gourdmewgoB126
MELO3C019265CmaCh02G001700Cucurbita maxima (Rimu)cmameB533
MELO3C019265CmoCh02G001730Cucurbita moschata (Rifu)cmomeB523
MELO3C019265Lsi10G001370Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C019265Cp4.1LG05g14290Cucurbita pepo (Zucchini)cpemeB667
MELO3C019265CsGy2G026000Cucumber (Gy14) v2cgybmeB083
MELO3C019265Carg03134Silver-seed gourdcarmeB0341
MELO3C019265Carg13528Silver-seed gourdcarmeB0030
MELO3C019265CsaV3_2G034980Cucumber (Chinese Long) v3cucmeB103
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019265Watermelon (97103) v2mewmbB083
MELO3C019265Wax gourdmewgoB107
MELO3C019265Wax gourdmewgoB140
MELO3C019265Melon (DHL92) v3.5.1memeB039
MELO3C019265Melon (DHL92) v3.5.1memeB057
MELO3C019265Cucumber (Gy14) v1cgymeB014
MELO3C019265Cucumber (Gy14) v1cgymeB072
MELO3C019265Cucumber (Gy14) v1cgymeB246
MELO3C019265Cucurbita maxima (Rimu)cmameB087
MELO3C019265Cucurbita maxima (Rimu)cmameB451
MELO3C019265Cucurbita maxima (Rimu)cmameB502
MELO3C019265Cucurbita moschata (Rifu)cmomeB080
MELO3C019265Cucurbita moschata (Rifu)cmomeB443
MELO3C019265Cucurbita moschata (Rifu)cmomeB482
MELO3C019265Cucurbita moschata (Rifu)cmomeB768
MELO3C019265Wild cucumber (PI 183967)cpimeB096
MELO3C019265Wild cucumber (PI 183967)cpimeB445
MELO3C019265Wild cucumber (PI 183967)cpimeB520
MELO3C019265Cucumber (Chinese Long) v2cumeB097
MELO3C019265Cucumber (Chinese Long) v2cumeB454
MELO3C019265Cucumber (Chinese Long) v2cumeB516
MELO3C019265Watermelon (Charleston Gray)mewcgB086
MELO3C019265Watermelon (Charleston Gray)mewcgB092
MELO3C019265Watermelon (97103) v1mewmB103
MELO3C019265Watermelon (97103) v1mewmB130
MELO3C019265Cucurbita pepo (Zucchini)cpemeB257
MELO3C019265Cucurbita pepo (Zucchini)cpemeB599
MELO3C019265Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C019265Cucumber (Gy14) v2cgybmeB395
MELO3C019265Cucumber (Gy14) v2cgybmeB452
MELO3C019265Silver-seed gourdcarmeB0863
MELO3C019265Cucumber (Chinese Long) v3cucmeB457
MELO3C019265Cucumber (Chinese Long) v3cucmeB532