MELO3C019265T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019265T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	High mobility group B protein 1
Location	chr11 : 10205254 .. 10207143 (-)
Sequence length	774

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGTAATCTTCTTCTTCACGATCATTTTCAGCTTCTTCTTTTTGCTTTTCATCTCCAATATGTTCTTACATTCTCTTGTTTCTATTTCTTTATGTAAGTTTTTACTTTCTGTACGATTCGTTTCTTTGCTTTTTGTAGTTTCTCTTCAACTTCGATTCTATGCAATCTTCATCTCTGTATTTTTTTTTCTCTTCTTATGCTTTCATTTTTCTTTCTAATTTATTTTTATATTCTTTTGTAATGTTTCGCGGCTTTGTTCGTTCCTAATTGAGTTGAATTTTACAGCCTGCGTTGTGTAATTCTTGTATGTTTTTAGTAGTTTGCTTTCCTATTTCGCAAGGTTTCTTCATTTCTCTGCATACCTGAACTACTCTACTGATATTATTCATTTATTCTGTATTTTAACTCTTTTAGTTTTCCTACGTTTTTGGCTATATACTAAATTGAATATACTCCTAAAGCTTTTATCCAATTTGCTATTACGTTTTCTTGTTATATAGATATACGATTTTTATCATTATCCGCTTTTTGAAGGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGTAAATATAATTTATAATTGAGGCTGCTTCCGTTTTGAAAGTCGTTCTTACATTCTAGTTTTTCTTAGATTTGTCCATTCTGATTTCGATTTCTTGTTTTGGAAATGATAGGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTAAGATCTTATACTGTTGTTTTGATCAGCATTACGTTCTTATTATTCCTCCATATTTATGTTTTAGATATGGCTGAGTGGAGGATCGGAGGACTTCTTGAGTTAGCTAGATTTTGTTATTTGCGTTTAACTGTGTTTTGTTAATTTGCAGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGTAAGACTGCGATTTCTTATTTTGGTACTATTTTCGTAGAACACTAATTCGAGACTATCAACAATAAACGATTAAGGAATAAGATTGGAGGTTTTTAGTTCTTCCACTTTAATTGAAGATAGTAACACGTTTTGTTCTCGGTATTCAATTCGAGACTAATTGTCGATGCAAATATGTGGAACTTGTGTTTCTCTTCCTCAGGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCGTAATTAACTTGTTCCCACTCTCTCTCTCCTTTCAGTCTTTCTCCTTCACTTCGTCAGAACATCACCAAGGTTTTATTTATCACCGAATCTCTCTTCTCTCTAACATCTCCTGGTTGACAGAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

mRNA sequence

ATTCCATCACTCTCCCTTTTCCTTCTCTGCGCCTCTCTCCTAATTCTACAGAATCACCATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAGGTATAGTTATCCAATCCAAAACATGCATACAAATTCATATGCATTATCTTCTCCCATTGTTCCTTTTAGTTAAACTATAGATGTTTGATTTTATTACTACGGCTAAAAGCTTATATTTGTTTTTGTATATCGTCTGCCAAGATTTCTGCAGGACTTGAATGTCCATTACAGGTAACAGATCAATCTCCATATCTTTTTAAATAAAAGTTTCATGGTTATGAGGACGAAAGTTAGCAAGTAAAGGGAGTCGAATGGAAGGCAAGAATTTGCATAAC

Coding sequence (CDS)

ATGAGAGCTCTCAGAAACGCCGTCGTCACTCACAAGAAACCCAACGCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGTAAGAAGAAAGATCAAAATGCTCCAAAACGTCCAGCTACGGCATTCTTCGTTTTCATGGAGGAATTTAGAATGATGTTCAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGCTGGTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTACGCTGAAAAAGCTTTGAAAAGAAAGGCAGAATATGAAATAGCTCTTGAAGCATACAAGAACAATTTCAATTGCTACACGGTGGCTGAACCTGAACTCGAAATGCCAACAGAATCACAAAAATCAACCTCCGAGGTCAATGATGACACAGAGCAGGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS*

Homology

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BLAST of MELO3C019265T1 vs. Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

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BLAST of MELO3C019265T1 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 12  KKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVG 71
           K  N   +K++ A+ K TK   KD N PKRP +AFFVFME+FR  +KE+ P+ K+  VVG
Sbjct: 9   KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68

Query: 72  KAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKST 131
           KAGG+KWK ++ AEKAP+  KA KRK EYE  L+AY N       AE E     ES KS 
Sbjct: 69  KAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY-NKKQAAGAAEEE-----ESDKSR 128

Query: 132 SEVNDDTEQEASS 145
           SEVNDD E +  S
Sbjct: 129 SEVNDDDEDQDGS 135

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BLAST of MELO3C019265T1 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.7e-27
Identity = 65/127 (51.18%), Postives = 77/127 (60.63%), Query Frame = 1


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDD 137
           WKS+SD+EKAPY  KA KRK EYE  ++AY          E   +   ES KS SEVND+
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDE 133

Query: 138 TEQEASS 145
            + E  S
Sbjct: 134 DDAEDGS 134

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BLAST of MELO3C019265T1 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 1


Query: 8   VVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAG 67
           +  +KK  A K ++   + K+ K    D N PKRP +AFFVFMEEFR +F ++ P+ KA 
Sbjct: 17  LAVNKKGAATKARKPAGKGKAAK----DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAV 76

Query: 68  PVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPT-- 127
             VGKA G KWK+MSDAEKAPY  K+ KRK EYE  + AY          + + E PT  
Sbjct: 77  SAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN---------KKQAEGPTGG 136

Query: 128 ---ESQKSTSEVNDDTEQEASS 145
              ES+KS SEVND+ + E  S
Sbjct: 137 DEEESEKSVSEVNDEDDDEEGS 145

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BLAST of MELO3C019265T1 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

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BLAST of MELO3C019265T1 vs. TrEMBL
Match: B9SDW3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

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BLAST of MELO3C019265T1 vs. TrEMBL
Match: A0A067EHU0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 86/152 (56.58%), Postives = 105/152 (69.08%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKS---KKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+  R   V  KKP+A  LK RKAE K  K    KKKD NAPKRP +A+F+FME+FR  F
Sbjct: 1   MKGPRVVAVAQKKPHADMLKARKAENKPKKEKAGKKKDSNAPKRPLSAYFIFMEDFRKSF 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYT 120
           KE FPD K+   +GKAGG+KWKSMS+AEKAPY +KAL +KAEYE+ALEAYK   N N   
Sbjct: 61  KESFPDNKSVAAMGKAGGQKWKSMSEAEKAPYVQKALNKKAEYELALEAYKKQLNDNGAG 120

Query: 121 VAEPELEMPTESQ---KSTSEVNDDTEQEASS 145
           V+E   +  +E Q    S+SE+ND+ EQE SS
Sbjct: 121 VSEDSWKSTSEVQSGKSSSSEINDEAEQEFSS 152

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BLAST of MELO3C019265T1 vs. TrEMBL
Match: W9RDH1_9ROSA (High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKA---EMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           MR  + A + HKKP+ + LK+ KA   + K  K+ KK+ +APKRPA+AFFVFMEEFR  +
Sbjct: 1   MRGPKTAAIAHKKPDVEILKKSKAGATKTKKEKASKKNSDAPKRPASAFFVFMEEFRKSY 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE +PD K+  VVGKAGGEKWKSMSDA+KAPY EKA KRKAEYE ALEAYK         
Sbjct: 61  KENYPDVKSVAVVGKAGGEKWKSMSDADKAPYVEKASKRKAEYEKALEAYKK-----LHG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 147
               E P ES+KS SEV++ +     ++S
Sbjct: 121 NGGDEKPEESEKSGSEVHEGSGDSGENNS 144

[Close]

BLAST of MELO3C019265T1 vs. TrEMBL
Match: A0A0D6R4H7_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           ++  ++  +  +KP  +K  Q K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+
Sbjct: 14  LKQTQDKKIGKRKPPTEK--QLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEK 73

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAE 120
            P+ K+  VVGKAGGEKWKSMS+ EKAPY  KA K+KAEYE  + AYKN    N    AE
Sbjct: 74  HPNTKSVSVVGKAGGEKWKSMSEGEKAPYEAKAAKKKAEYEKTMAAYKNKQEGNAEEAAE 133

Query: 121 PELEMPTESQKSTSEVNDDTE 140
                  ES KS SEVND+ E
Sbjct: 134 -------ESDKSKSEVNDEEE 145

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BLAST of MELO3C019265T1 vs. TrEMBL
Match: A0A0C9S804_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 70/122 (57.38%), Postives = 82/122 (67.21%), Query Frame = 1


Query: 20  KQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWK 79
           KQ K + K  K  KKD N PKRP +AFFVF+EEFR  +KE+ P+ K+  VVGKAGGEKWK
Sbjct: 31  KQLKRQAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKEYKEKHPNTKSVSVVGKAGGEKWK 90

Query: 80  SMSDAEKAPYAEKALKRKAEYEIALEAYKN--NFNCYTVAEPELEMPTESQKSTSEVNDD 139
           SMS+ EKAPY  KA K+KAEYE ++ AYKN    N    AE       ES KS SEVND+
Sbjct: 91  SMSEGEKAPYEAKAAKKKAEYEKSMAAYKNKQEGNVEEAAE-------ESDKSKSEVNDE 145

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BLAST of MELO3C019265T1 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 13  KPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGK 72
           K  A   K  K E +  K  KKD N PKR  +AFFVF+E+FR+ FK++ P+ KA   VGK
Sbjct: 27  KRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGK 86

Query: 73  AGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTS 132
           AGG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  N           E   ES+KS S
Sbjct: 87  AGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSDESEKSRS 144

Query: 133 EVNDDTE 140
           E+ND+ E
Sbjct: 147 EINDEDE 144

[Close]

BLAST of MELO3C019265T1 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1


Query: 30  KSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPY 89
           K+  KD N PKRPA+AFFVFME+FR  FK++ P  K+   VGKA G+KWKS+SD+EKAPY
Sbjct: 29  KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88

Query: 90  AEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
             KA KRK EYE  ++AY          E   +   ES KS SEVND+ + E  S
Sbjct: 89  VAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDGS 137

[Close]

BLAST of MELO3C019265T1 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 53/90 (58.89%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 18  KLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGEK 77
           KL   K   K  K   KD N PKRP++AFFVFME+FR+ +KE+ P  K+   VGKAGGEK
Sbjct: 14  KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEK 73

Query: 78  WKSMSDAEKAPYAEKALKRKAEYEIALEAY 108
           WKS+SD+EKAPY  KA KRK EYE  ++AY
Sbjct: 74  WKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103

[Close]

BLAST of MELO3C019265T1 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 17  QKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGGE 76
           Q+LK R    K+ K  KKD N PKRP +AFFVF+E+FR  F    P+ K+   VGKA G 
Sbjct: 15  QRLKTRGR--KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGA 74

Query: 77  KWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVND 136
           +WK+M+D +KAPY  KA  RK EY   ++ Y       T  E +     +S KS SEV++
Sbjct: 75  RWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREED-----DSDKSKSEVDE 132

Query: 137 DTEQE 142
              +E
Sbjct: 135 AVSEE 132

[Close]

BLAST of MELO3C019265T1 vs. TAIR10
Match: AT5G23420.1 (AT5G23420.1 high-mobility group box 6)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = 1


Query: 10  THKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPV 69
           T   P  ++LK+   E KS+ +  K    PKRP TAFF+FM +FR  FK +   + A   
Sbjct: 90  TSDGPKPKRLKKTNDEKKSSSTSNK----PKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA 149

Query: 70  VGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEA----------YKNNFNCYTVAEP 129
             K GGEKWKS+++ EK  Y +KA + KAEY  +LE+           K + +     E 
Sbjct: 150 A-KIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDEEKQSDDVDDAEEK 209

Query: 130 ELEMPTESQKSTSEVNDDTEQEA 143
           +++   E ++   E  DD ++EA
Sbjct: 210 QVDDDDEVEEKEVENTDDDKKEA 227

[Close]

BLAST of MELO3C019265T1 vs. NCBI nr
Match: gi|659111708|ref|XP_008455870.1| (PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120
           FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPE 120

Query: 121 LEMPTESQKSTSEVNDDTEQEASSSS 147
           LEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 LEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of MELO3C019265T1 vs. NCBI nr
Match: gi|659111706|ref|XP_008455869.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 7.3e-74
Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60
           MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKKKDQNAPKRPATAFFVFMEEFRMMFKEQ 60

Query: 61  FPDAKAGPVVGKAGGEKWKSMSDA--------EKAPYAEKALKRKAEYEIALEAYKNNFN 120
           FPDAKAGPVVGKAGGEKWKSMSDA        EKAPYAEKALKRKAEYEIALEAYKNNFN
Sbjct: 61  FPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFN 120

Query: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 147
           CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS
Sbjct: 121 CYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of MELO3C019265T1 vs. NCBI nr
Match: gi|802732116|ref|XP_012086327.1| (PREDICTED: high mobility group B protein 3-like [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-40
Identity = 94/151 (62.25%), Postives = 110/151 (72.85%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKSTKSKK-------KDQNAPKRPATAFFVFMEEF 60
           M+A R AV++HKK +A+KLK RK E K+ K K        KD +APKRP TAFFVFME F
Sbjct: 1   MKAPRPAVISHKKLDAEKLKARKVETKTPKEKTSKKNSAPKDPDAPKRPPTAFFVFMEGF 60

Query: 61  RMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNC 120
           R  FKE FP+ K+   VGKAGGEKWKSMSD+EKAPYAEKALK+KAEYE A+EAYK   N 
Sbjct: 61  RKSFKENFPNNKSVSTVGKAGGEKWKSMSDSEKAPYAEKALKKKAEYEKAVEAYKKKQN- 120

Query: 121 YTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
                 ++E   ES+KSTSEV+DD EQEASS
Sbjct: 121 ---YNGDIEKSEESEKSTSEVHDDAEQEASS 147

[Close]

BLAST of MELO3C019265T1 vs. NCBI nr
Match: gi|1009128229|ref|XP_015881117.1| (PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba])

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 90/147 (61.22%), Postives = 106/147 (72.11%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEM---KSTKSKKKDQNAPKRPATAFFVFMEEFRMMF 60
           M+A + AV+ HKKP+A+ LK+RKAEM   K  K+ KK  +APKRPATAFF+FMEEFR   
Sbjct: 1   MKAPKAAVIAHKKPDAEMLKKRKAEMITMKKKKASKKSSDAPKRPATAFFIFMEEFRKTL 60

Query: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120
           KE  PD K+GP VGKAGGEKWKSMSD+EKA Y EKALKRKAEYE ALEAYK         
Sbjct: 61  KENNPDIKSGPAVGKAGGEKWKSMSDSEKALYIEKALKRKAEYEKALEAYKK-----LNG 120

Query: 121 EPELEMPTESQKSTSEVNDDTEQEASS 145
           + + E    S+KSTSEV+D  E+  SS
Sbjct: 121 KGDDEKAESSEKSTSEVHDGEEEAESS 142

[Close]

BLAST of MELO3C019265T1 vs. NCBI nr
Match: gi|255566393|ref|XP_002524182.1| (PREDICTED: HMG1/2-like protein [Ricinus communis])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 93/157 (59.24%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 1   MRALRNAVVTHKKPNAQKLKQRKAEMK------STKSKK---KDQNAPKRPATAFFVFME 60
           M+  RNAV+  KKP+++ LK RKAE K      S++ KK   KD +APKRPA+AFF+FM+
Sbjct: 1   MKGPRNAVIAQKKPSSKVLKARKAESKPGKEEASSRKKKNVSKDTDAPKRPASAFFIFMD 60

Query: 61  EFRMMFKEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYK--- 120
           EFR  FKE++PD KA   VGKAGGEKWKS+S+ +KAPY EKALKRKAEYE  LEAYK   
Sbjct: 61  EFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSETDKAPYLEKALKRKAEYEKVLEAYKQQK 120

Query: 121 -NNFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASS 145
            NN N       + E   ES+KSTSEVN+D EQEASS
Sbjct: 121 FNNNNKNNGGNEKSE--EESEKSTSEVNNDDEQEASS 155

The following BLAST results are available for this feature:

BLAST of MELO3C019265T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGB1_ARATH	2.1e-28	52.76	High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1	[more]
HMGL_IPONI	7.9e-28	51.88	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGB3_ARATH	6.7e-27	51.18	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGL_SOYBN	1.1e-24	46.48	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGB2_ARATH	3.1e-24	52.17	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]

BLAST of MELO3C019265T1 vs. TrEMBL


Match Name	E-value	Identity	Description
B9SDW3_RICCO	1.3e-37	59.24	DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0487790 PE=4 SV=...	[more]
A0A067EHU0_CITSI	1.2e-35	56.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044275mg PE=4 SV=1	[more]
W9RDH1_9ROSA	3.9e-34	55.03	High mobility group B protein 1 OS=Morus notabilis GN=L484_001986 PE=4 SV=1	[more]
A0A0D6R4H7_ARACU	2.7e-27	51.06	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A0C9S804_9SPER	4.6e-27	57.38	TSA: Wollemia nobilis Ref_Wollemi_Transcript_7036_999 transcribed RNA sequence O...	[more]

BLAST of MELO3C019265T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51880.2	1.2e-29	52.76	high mobility group B1	[more]
AT1G20693.1	1.7e-25	52.17	high mobility group B2	[more]
AT1G20696.2	1.5e-24	58.89	high mobility group B3	[more]
AT2G17560.1	1.4e-19	43.20	high mobility group B4	[more]
AT5G23420.1	1.6e-15	34.97	high-mobility group box 6	[more]

BLAST of MELO3C019265T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111708\|ref\|XP_008455870.1\|	4.6e-76	100.00	PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]	[more]
gi\|659111706\|ref\|XP_008455869.1\|	7.3e-74	94.81	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
gi\|802732116\|ref\|XP_012086327.1\|	6.9e-40	62.25	PREDICTED: high mobility group B protein 3-like [Jatropha curcas]	[more]
gi\|1009128229\|ref\|XP_015881117.1\|	4.9e-38	61.22	PREDICTED: high mobility group B protein 1-like [Ziziphus jujuba]	[more]
gi\|255566393\|ref\|XP_002524182.1\|	1.9e-37	59.24	PREDICTED: HMG1/2-like protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019265	MELO3C019265	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019265T1	MELO3C019265T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019265T1.cds6	MELO3C019265T1.cds6	CDS
MELO3C019265T1.cds5	MELO3C019265T1.cds5	CDS
MELO3C019265T1.cds4	MELO3C019265T1.cds4	CDS
MELO3C019265T1.cds3	MELO3C019265T1.cds3	CDS
MELO3C019265T1.cds2	MELO3C019265T1.cds2	CDS
MELO3C019265T1.cds1	MELO3C019265T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 37..110 score: 9.5
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 score: 6.2
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 score: 1.6
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 39..108 score: 17
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 30..111 score: 6.81
None	No IPR available	unknown	Coil	Coil	coord: 16..36 score: -coord: 90..110 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 34..144 score: 1.2
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 34..144 score: 1.2