CU116545 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU116545
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U3 small nucleolar ribonucleoprotein protein imp4, putative
Location	Chr5 : 16052598 .. 16061921 (-)
Sequence length	626

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AATGCTTCAGAAGTTGATCCTAAAATTTTGATAACTACATCTCGGGATCCAAGTGCACCTTTGACACAGTTTGCAAAGGAACTAAAAATTGTTTTTCCCAATGCACAACGAATGAATCGTGGTGGTCAGGTGATCTCAGAGATTATAGAGACCTGTCGTGCTCATGAATTTACAGATGTTATTTTAGTTCATGAACATCGTGGTGTGCCAGATGGTTTAATTATCAGCCATCTTCCATTTGGTCCAACTGCCTATTTTGGATTGTTGAATGTGGTTACAAGACATGAAATCAGGGACAAAAAGGCTATGGGAACAATGCCTGAGGCCTATCCGCACATAATTTTGAACAATTTTACCACGAAGTTGGGTGAAAGGACGGCCAATATCTTAAAGCATCTATTTCCTGTGCCGAAGCCAGATACCAAACGTGTGGTTACTTTTGCTAATCAGTCTGACTATATTTCATTCAGGCATCATATTTATGAGAAGCATGGAGGTGCCAAATCAATTGAGCTGAAGGAGATTGGTCCACGGTTTGAATTGCGACTGTACCAGATAAAGTTAGGAACTGTGGACCAAACGGAAGCTCAGAATGAATGGGTGATTCGACCATATATGAAAACAAC

Library


Library category	ESTs
Cucumber fruit library	1
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU116545 vs. Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-66
Identity = 120/204 (58.82%), Postives = 157/204 (76.96%), Query Frame = 1


Query: 16  DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE 75
           DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE
Sbjct: 82  DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHE 141

Query: 76  HRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGER 135
           HRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GT  EA PH+I++ F+++LG+R
Sbjct: 142 HRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIMHGFSSRLGKR 201

Query: 136 TANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQ 195
            ++IL++LFPVPK D++RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY 
Sbjct: 202 VSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKK-TNHRNVELTEVGPRFELKLYM 261

Query: 196 IKLGTVDQ-TEAQNEWVIRPYMKT 255
           I+LGT++Q   A  EW   PY  T
Sbjct: 262 IRLGTLEQEATADVEWRWHPYTNT 281

Query: 256  315
           
Sbjct: 322  281

Query: 316  375
           
Sbjct: 382  281

Query: 376  435
           
Sbjct: 442  281

Query: 436  495
           
Sbjct: 502  281

Query: 496  555
           
Sbjct: 562  281

Query: 556  615
           
Sbjct: 622  281

Query: 616  625
           
Sbjct: 682  281

[Close]

BLAST of CU116545 vs. Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 16  DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE 75
           DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE
Sbjct: 82  DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHE 141

Query: 76  HRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGER 135
           HRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R
Sbjct: 142 HRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKR 201

Query: 136 TANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQ 195
            ++IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY 
Sbjct: 202 VSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK-TDHRNVELTEVGPRFELKLYM 261

Query: 196 IKLGTVDQ-TEAQNEWVIRPYMKT 255
           I+LGT++Q   A  EW   PY  T
Sbjct: 262 IRLGTLEQEATADVEWRWHPYTNT 281

Query: 256  315
           
Sbjct: 322  281

Query: 316  375
           
Sbjct: 382  281

Query: 376  435
           
Sbjct: 442  281

Query: 436  495
           
Sbjct: 502  281

Query: 496  555
           
Sbjct: 562  281

Query: 556  615
           
Sbjct: 622  281

Query: 616  625
           
Sbjct: 682  281

[Close]

BLAST of CU116545 vs. Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 16  DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE 75
           DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE
Sbjct: 82  DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHE 141

Query: 76  HRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGER 135
           HRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R
Sbjct: 142 HRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKR 201

Query: 136 TANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQ 195
            ++IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY 
Sbjct: 202 VSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK-TDHRNVELTEVGPRFELKLYM 261

Query: 196 IKLGTVDQ-TEAQNEWVIRPYMKT 255
           I+LGT++Q   A  EW   PY  T
Sbjct: 262 IRLGTLEQEATADVEWRWHPYTNT 281

Query: 256  315
           
Sbjct: 322  281

Query: 316  375
           
Sbjct: 382  281

Query: 376  435
           
Sbjct: 442  281

Query: 436  495
           
Sbjct: 502  281

Query: 496  555
           
Sbjct: 562  281

Query: 556  615
           
Sbjct: 622  281

Query: 616  625
           
Sbjct: 682  281

[Close]

BLAST of CU116545 vs. Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 16  DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE 75
           DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE
Sbjct: 82  DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHE 141

Query: 76  HRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGER 135
           HRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R
Sbjct: 142 HRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKR 201

Query: 136 TANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQ 195
            ++IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY 
Sbjct: 202 VSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK-TDHRNVELTEVGPRFELKLYM 261

Query: 196 IKLGTVDQ-TEAQNEWVIRPYMKT 255
           I+LGT++Q   A  EW   PY  T
Sbjct: 262 IRLGTLEQEATADVEWRWHPYTNT 281

Query: 256  315
           
Sbjct: 322  281

Query: 316  375
           
Sbjct: 382  281

Query: 376  435
           
Sbjct: 442  281

Query: 436  495
           
Sbjct: 502  281

Query: 496  555
           
Sbjct: 562  281

Query: 556  615
           
Sbjct: 622  281

Query: 616  625
           
Sbjct: 682  281

[Close]

BLAST of CU116545 vs. Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-66
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 1


Query: 16  DPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHE 75
           DPK++ITTSRDPS+ L  FAKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHE
Sbjct: 82  DPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHE 141

Query: 76  HRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTTKLGER 135
           HRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R
Sbjct: 142 HRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKR 201

Query: 136 TANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQ 195
            ++IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY 
Sbjct: 202 VSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK-TDHRNVELTEVGPRFELKLYM 261

Query: 196 IKLGTVDQ-TEAQNEWVIRPYMKT 255
           I+LGT++Q   A  EW   PY  T
Sbjct: 262 IRLGTLEQEATADVEWRWHPYTNT 281

Query: 256  315
           
Sbjct: 322  281

Query: 316  375
           
Sbjct: 382  281

Query: 376  435
           
Sbjct: 442  281

Query: 436  495
           
Sbjct: 502  281

Query: 496  555
           
Sbjct: 562  281

Query: 556  615
           
Sbjct: 622  281

Query: 616  625
           
Sbjct: 682  281

[Close]

BLAST of CU116545 vs. TrEMBL
Match: A0A068USK9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031383001 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 4.6e-105
Identity = 183/208 (87.98%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSRDPSAPLTQF KELK VFPN QRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  NATERDPKILLTTSRDPSAPLTQFVKELKFVFPNTQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDGL+ISHLPFGPTAYFGLLNVVTRH+I+DKKA+GTMPEAYPH+IL+NF+T
Sbjct: 137 ILVHEHRGVPDGLVISHLPFGPTAYFGLLNVVTRHDIKDKKAIGTMPEAYPHLILDNFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHL PVPKPDTKR++TFANQSDYISFRHH+YEK GG KSIELKEIGPRFE
Sbjct: 197 KLGERTANILKHLLPVPKPDTKRIITFANQSDYISFRHHLYEKRGGPKSIELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGT+DQ EAQ EWV+RPYM T
Sbjct: 257 LRLYQIKLGTMDQDEAQTEWVLRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. TrEMBL
Match: A0A067KWH1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24506 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 6.0e-105
Identity = 181/208 (87.02%), Postives = 200/208 (96.15%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSR+PSAPL QF KELK VFPNA+R+NRGGQVISEIIE+CRAH++TDV
Sbjct: 77  NATEKDPKILLTTSRNPSAPLIQFVKELKFVFPNAERINRGGQVISEIIESCRAHDYTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRH+I+DKKA+GTMPEAYPH+ILNNF T
Sbjct: 137 ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDIKDKKAIGTMPEAYPHLILNNFKT 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHLFPVPKPDTKR++TFANQSDYISFRHH+YEKHGG KSIELKEIGPRFE
Sbjct: 197 KLGERTANILKHLFPVPKPDTKRIITFANQSDYISFRHHLYEKHGGPKSIELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           +RLYQ+KLGT+DQ+EAQ EWVIRPYM T
Sbjct: 257 MRLYQVKLGTMDQSEAQTEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. TrEMBL
Match: A0A059BJV0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03251 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.0e-104
Identity = 183/208 (87.98%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           +A E DPKIL+TTSR+PSAPL QF KEL IVFPNAQRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  HAMERDPKILLTTSRNPSAPLKQFVKELTIVFPNAQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRH+I+DKKA+GTMPEAYPH+ILNNF+T
Sbjct: 137 ILVHEHRGVPDGLIVSHLPFGPTAYFGLLNVVTRHDIKDKKAIGTMPEAYPHLILNNFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLG+RTANILKHLFPVPKPDTKR+VTFANQSDY+SFRHH+YEK GG KS+ELKEIGPRFE
Sbjct: 197 KLGQRTANILKHLFPVPKPDTKRIVTFANQSDYVSFRHHLYEKDGGPKSVELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQ+KLGTVDQTEAQ EWVIRPYM T
Sbjct: 257 LRLYQVKLGTVDQTEAQIEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. TrEMBL
Match: A5B6W8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g00850 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.8e-104
Identity = 181/208 (87.02%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSR+PSAPLTQF KELK VFPNAQRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  NATEKDPKILLTTSRNPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           +LVHEHRGVPDG+IISHLPFGPTAYFGLLNVVTRH+I+DKKA+G M EAYPH+ILNNF+T
Sbjct: 137 VLVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKAIGKMSEAYPHLILNNFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHLFPVPKPDTKR++TFANQSDY+SFRHH+YEK GG KSIELKE+GPRFE
Sbjct: 197 KLGERTANILKHLFPVPKPDTKRIITFANQSDYVSFRHHVYEKRGGPKSIELKEVGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGT+DQ+EAQ EWVIRPYM T
Sbjct: 257 LRLYQIKLGTMDQSEAQIEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. TrEMBL
Match: V4TKJ2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032276mg PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.8e-104
Identity = 184/208 (88.46%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSRDPSAPLTQF KELK VFPNAQRMNRGGQVISEIIETCRAHEFTDV
Sbjct: 77  NATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           +LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRH+I+D+KA+GTMPEAYPH+IL+NF +
Sbjct: 137 VLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKAIGTMPEAYPHLILDNFKS 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHLFPVPK DTKR++TFANQSDYISFRHHIYEK GG KS+ELKEIGPRFE
Sbjct: 197 KLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGTVDQ+EAQ EWVIRPYM T
Sbjct: 257 LRLYQIKLGTVDQSEAQIEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. NCBI nr
Match: gi|659072465|ref|XP_008465711.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 6.8e-118
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV
Sbjct: 77  NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT
Sbjct: 137 ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE
Sbjct: 197 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGTVDQTEAQNEWVIRPYMKT
Sbjct: 257 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. NCBI nr
Match: gi|449451998|ref|XP_004143747.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis sativus])

HSP 1 Score: 430.3 bits (1105), Expect = 2.0e-117
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV
Sbjct: 77  NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKK MGTMPEAYPHIILNNFTT
Sbjct: 137 ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKTMGTMPEAYPHIILNNFTT 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE
Sbjct: 197 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGTVDQTEAQNEWVIRPYMKT
Sbjct: 257 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. NCBI nr
Match: gi|698575123|ref|XP_009775852.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nicotiana sylvestris])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 183/208 (87.98%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSR+PSAPLTQF KELKIVFPNAQRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  NATEKDPKILLTTSRNPSAPLTQFVKELKIVFPNAQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDG+IISHLPFGPTAYFGLLNVVTRH+I+DKK++GTMPEAYPH+I + F+T
Sbjct: 137 ILVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKSIGTMPEAYPHLIFDKFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERT NILKHLFPVPKPDTKR++TFANQSDYISFRHHIYEKHGG KSIELKE+GPRFE
Sbjct: 197 KLGERTVNILKHLFPVPKPDTKRIITFANQSDYISFRHHIYEKHGGPKSIELKEVGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGT+DQ EAQ EWVIRPYM T
Sbjct: 257 LRLYQIKLGTMDQDEAQTEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. NCBI nr
Match: gi|698558154|ref|XP_009771221.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 183/208 (87.98%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSR+PSAPLTQF KELKIVFPNAQRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  NATEKDPKILLTTSRNPSAPLTQFVKELKIVFPNAQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDG+IISHLPFGPTAYFGLLNVVTRH+I+DKK++GTMPEAYPH+I + F+T
Sbjct: 137 ILVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKSIGTMPEAYPHLIFDKFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERT NILKHLFPVPKPDTKR++TFANQSDYISFRHHIYEKHGG KSIELKE+GPRFE
Sbjct: 197 KLGERTVNILKHLFPVPKPDTKRIITFANQSDYISFRHHIYEKHGGPKSIELKEVGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGT+DQ EAQ EWVIRPYM T
Sbjct: 257 LRLYQIKLGTMDQDEAQTEWVIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

[Close]

BLAST of CU116545 vs. NCBI nr
Match: gi|697132832|ref|XP_009620470.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Nicotiana tomentosiformis])

HSP 1 Score: 396.4 bits (1017), Expect = 3.2e-107
Identity = 182/208 (87.50%), Postives = 199/208 (95.67%), Query Frame = 1


Query: 1   NASEVDPKILITTSRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDV 60
           NA+E DPKIL+TTSR+PSAPLTQF KELKIVFPNAQRMNRGGQVISEIIETCRAH+FTDV
Sbjct: 77  NATEKDPKILLTTSRNPSAPLTQFVKELKIVFPNAQRMNRGGQVISEIIETCRAHDFTDV 136

Query: 61  ILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIRDKKAMGTMPEAYPHIILNNFTT 120
           ILVHEHRGVPDG+IISHLPFGPTAYFGLLNVVTRH+I+DKK++GTMPEAYPH+I + F+T
Sbjct: 137 ILVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKSIGTMPEAYPHLIFDKFST 196

Query: 121 KLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFE 180
           KLGERT NILKHLFPVPKPDTKR++TFANQSDYISFRHHIYEKHGG KSIELKE+GPRFE
Sbjct: 197 KLGERTVNILKHLFPVPKPDTKRIITFANQSDYISFRHHIYEKHGGPKSIELKEVGPRFE 256

Query: 181 LRLYQIKLGTVDQTEAQNEWVIRPYMKT 240
           LRLYQIKLGT+DQ EAQ EW+IRPYM T
Sbjct: 257 LRLYQIKLGTMDQDEAQTEWIIRPYMNT 284

Query: 241  300
           
Sbjct: 317  284

Query: 301  360
           
Sbjct: 377  284

Query: 361  420
           
Sbjct: 437  284

Query: 421  480
           
Sbjct: 497  284

Query: 481  540
           
Sbjct: 557  284

Query: 541  600
           
Sbjct: 617  284

Query: 601  625
           
Sbjct: 677  284

The following BLAST results are available for this feature:

BLAST of CU116545 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IMP4_BOVIN	2.1e-66	58.82	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=...	[more]
IMP4_RAT	2.7e-66	59.31	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 P...	[more]
IMP4_PONAB	2.7e-66	59.31	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 S...	[more]
IMP4_MOUSE	2.7e-66	59.31	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 S...	[more]
IMP4_HUMAN	2.7e-66	59.31	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 S...	[more]

BLAST of CU116545 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068USK9_COFCA	4.6e-105	87.98	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00031383001 PE=4 SV=1	[more]
A0A067KWH1_JATCU	6.0e-105	87.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24506 PE=4 SV=1	[more]
A0A059BJV0_EUCGR	1.0e-104	87.98	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03251 PE=4 SV=1	[more]
A5B6W8_VITVI	1.8e-104	87.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g00850 PE=4 SV=...	[more]
V4TKJ2_9ROSI	1.8e-104	88.46	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032276mg PE=4 SV=1	[more]

BLAST of CU116545 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072465\|ref\|XP_008465711.1\|	6.8e-118	100.00	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]	[more]
gi\|449451998\|ref\|XP_004143747.1\|	2.0e-117	99.52	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis sativus]	[more]
gi\|698575123\|ref\|XP_009775852.1\|	2.4e-107	87.98	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nicotiana syl...	[more]
gi\|698558154\|ref\|XP_009771221.1\|	2.4e-107	87.98	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1 [Ni...	[more]
gi\|697132832\|ref\|XP_009620470.1\|	3.2e-107	87.50	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Nicotiana tomentos...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004154	Anticodon-bd
IPR007109	Brix

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G453170	Csa5G453170	gene
Csa5G453690	Csa5G453690	gene
Csa5G453180	Csa5G453180	gene
Csa5G453680	Csa5G453680	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
Cuc3_2_B02	Cuc3_2_B02	EST
FKNP3UI02NKOEV	FKNP3UI02NKOEV	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 6..189 score: 7.36
IPR007109	Brix domain	GENE3D	G3DSA:3.40.50.10480		coord: 8..187 score: 1.7
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 14..184 score: 1.7
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 10..186 score: 1.5
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 7..192 score: 4
None	No IPR available	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 3..209 score: 1.6E
None	No IPR available	PANTHER	PTHR22734:SF2	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 3..209 score: 1.6E