Csa5G453180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G453180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 16056004 .. 16056662 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTCCAAGCGAGGGGATTCGATTCAAGTGGCGGCGAAGAGTCTCTTACCAACGTTGGCTGTGAGGGGCTTCTTTTTGGCCATTCCACCCTCTTTGAATCTCAAGGGGGCCTTGGTTGGTGAAGTTAAAAACGATGAGAGATGGGAGGTTATGGGTTCAGCGGGTACTAAGAGAGTGGAGACTAAAGAAACTGGATAAAATGATAAGAGAGGTAGCGATCAGGTTGTGGAGGTTGGAGGGGTTAAGTTGAAACGTAAGGGAGGTAGTGACAGCTTATCTAGAGAGTTAAAGAAACTGGATAGCTCTGTAAATTGTGGGGGCAAGAAAGCCTTAAAGGAGGCAAGGTCGTCTAGGTCGTTATGTTAAAAATTGTATCTTTGCATGTTAGGGGGTTGGAGGGTCAGTCTAAAAGAAGCCTTGTTAAGGAGGTGCTTAGACAAGAGGATTCAGACATTGTTTTTCTGATGGAAACCAAAAGAAGTGGTTTCTGTAAAAGGATAACTAGTATTTGGAAGAGTAGGAGGTTCTTGATGCTGAAGGTTTGTTTGGTGGCATTCTCATGTTGTGGAATTCGAGATTGTGTTGCTTTTGAAGTGATCCATGACAGGCATTCCACTACTGTGGCTTTTCTGGATGGTGAGGGTCATGAGTTTTGA

mRNA sequence

ATGTGGTCCAAGCGAGGGGATTCGATTCAAGTGGCGGCGAAGAGTCTCTTACCAACGTTGGCTGTGAGGGGCTTCTTTTTGGCCATTCCACCCTCTTTGAATCTCAAGGGGGCCTTGGTTGGTGAAGTTAAAAACGATGAGAGATGGGAGGTTATGGGTTCAGCGGGGGTTAAGTTGAAACGTAAGGGAGGTAGTGACAGCTTATCTAGAGAGTTAAAGAAACTGGATAGCTCTGTAAATTGTGGGGGCAAGAAAGCCTTAAAGGAGGCAAGGTCGTCTAGGGGGTTGGAGGGTCAGTCTAAAAGAAGCCTTGTTAAGGAGGTGCTTAGACAAGAGGATTCAGACATTGTTTTTCTGATGGAAACCAAAAGAAGTGGTTTCTGTAAAAGGATAACTAGTATTTGGAAGAGTAGGAGGTTCTTGATGCTGAAGGTTTGTTTGGTGGCATTCTCATGTTGTGGAATTCGAGATTGTGTTGCTTTTGAAGTGATCCATGACAGGCATTCCACTACTGTGGCTTTTCTGGATGGTGAGGGTCATGAGTTTTGA

Coding sequence (CDS)

ATGTGGTCCAAGCGAGGGGATTCGATTCAAGTGGCGGCGAAGAGTCTCTTACCAACGTTGGCTGTGAGGGGCTTCTTTTTGGCCATTCCACCCTCTTTGAATCTCAAGGGGGCCTTGGTTGGTGAAGTTAAAAACGATGAGAGATGGGAGGTTATGGGTTCAGCGGGGGTTAAGTTGAAACGTAAGGGAGGTAGTGACAGCTTATCTAGAGAGTTAAAGAAACTGGATAGCTCTGTAAATTGTGGGGGCAAGAAAGCCTTAAAGGAGGCAAGGTCGTCTAGGGGGTTGGAGGGTCAGTCTAAAAGAAGCCTTGTTAAGGAGGTGCTTAGACAAGAGGATTCAGACATTGTTTTTCTGATGGAAACCAAAAGAAGTGGTTTCTGTAAAAGGATAACTAGTATTTGGAAGAGTAGGAGGTTCTTGATGCTGAAGGTTTGTTTGGTGGCATTCTCATGTTGTGGAATTCGAGATTGTGTTGCTTTTGAAGTGATCCATGACAGGCATTCCACTACTGTGGCTTTTCTGGATGGTGAGGGTCATGAGTTTTGA

Protein sequence

MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLKRKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLMETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGHEF*
Homology
[Close]
BLAST of Csa5G453180 vs. TrEMBL
Match: A0A0A0KNA2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453180 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.8e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1 

Query: 1   MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK 60
           MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK
Sbjct: 1   MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK 60

Query: 61  RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM 120
           RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM
Sbjct: 61  RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM 120

Query: 121 ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH 180
           ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH
Sbjct: 121 ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH 180

Query: 181 EF 183
           EF
Sbjct: 181 EF 182

[Close]
BLAST of Csa5G453180 vs. TrEMBL
Match: A0A0A0LY03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.9e-27
Identity = 84/175 (48.00%), Postives = 98/175 (56.00%), Query Frame = 1 

Query: 37  GALVGEVKNDERWEVMGSA------------------------GVKLKRKGGSDSLSREL 96
           GAL+GEVKNDERW+++ S                         GVKLKRK GSD+LSREL
Sbjct: 405 GALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGVKLKRKEGSDNLSREL 464

Query: 97  KKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLMETKRSGFCK-RI 156
           KKLDS                    GQ+KR LVKEVLRQE+ D+V  METKRS FC  RI
Sbjct: 465 KKLDSL-------------------GQTKRRLVKEVLRQENPDVVISMETKRSEFCSWRI 524

Query: 157 TSIWKSRR----FLMLK-VCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGHE 182
            SIWK RR     L  K +     +   +R CVA EV+H RHS T+AFLDG+G E
Sbjct: 525 ASIWKRRRVEWEVLEAKGLSSGILALWNLRLCVAIEVVHGRHSITIAFLDGDGEE 560

[Close]
BLAST of Csa5G453180 vs. TrEMBL
Match: A0A0A0KTS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G625990 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 92  SSRGLEGQSKRSLVKEVLRQEDSDIVFLMETKRSGFC-KRITSIWKSRRFLMLKVCLVAF 151
           +SRGLEG+ KR LVKEVL QE SDIV LME+KRS FC KRI SIWK  R           
Sbjct: 94  TSRGLEGKDKRRLVKEVLSQECSDIVKLMESKRSKFCSKRIASIWKRMR----------V 153

Query: 152 SCCGIRDCVAFEVIHDRHSTTVAFLDGEGHEF 183
                R CVA EV+  RHS T+AFLD +G EF
Sbjct: 154 KWENSRSCVATEVVRGRHSITIAFLDNDGEEF 175

[Close]
BLAST of Csa5G453180 vs. NCBI nr
Match: gi|700195933|gb|KGN51110.1| (hypothetical protein Csa_5G453180 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 2.6e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1 

Query: 1   MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK 60
           MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK
Sbjct: 1   MWSKRGDSIQVAAKSLLPTLAVRGFFLAIPPSLNLKGALVGEVKNDERWEVMGSAGVKLK 60

Query: 61  RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM 120
           RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM
Sbjct: 61  RKGGSDSLSRELKKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLM 120

Query: 121 ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH 180
           ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH
Sbjct: 121 ETKRSGFCKRITSIWKSRRFLMLKVCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGH 180

Query: 181 EF 183
           EF
Sbjct: 181 EF 182

[Close]
BLAST of Csa5G453180 vs. NCBI nr
Match: gi|700211649|gb|KGN66745.1| (hypothetical protein Csa_1G673520 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 84/175 (48.00%), Postives = 98/175 (56.00%), Query Frame = 1 

Query: 37  GALVGEVKNDERWEVMGSA------------------------GVKLKRKGGSDSLSREL 96
           GAL+GEVKNDERW+++ S                         GVKLKRK GSD+LSREL
Sbjct: 405 GALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGVKLKRKEGSDNLSREL 464

Query: 97  KKLDSSVNCGGKKALKEARSSRGLEGQSKRSLVKEVLRQEDSDIVFLMETKRSGFCK-RI 156
           KKLDS                    GQ+KR LVKEVLRQE+ D+V  METKRS FC  RI
Sbjct: 465 KKLDSL-------------------GQTKRRLVKEVLRQENPDVVISMETKRSEFCSWRI 524

Query: 157 TSIWKSRR----FLMLK-VCLVAFSCCGIRDCVAFEVIHDRHSTTVAFLDGEGHE 182
            SIWK RR     L  K +     +   +R CVA EV+H RHS T+AFLDG+G E
Sbjct: 525 ASIWKRRRVEWEVLEAKGLSSGILALWNLRLCVAIEVVHGRHSITIAFLDGDGEE 560

[Close]
BLAST of Csa5G453180 vs. NCBI nr
Match: gi|700197162|gb|KGN52339.1| (hypothetical protein Csa_5G625990 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 92  SSRGLEGQSKRSLVKEVLRQEDSDIVFLMETKRSGFC-KRITSIWKSRRFLMLKVCLVAF 151
           +SRGLEG+ KR LVKEVL QE SDIV LME+KRS FC KRI SIWK  R           
Sbjct: 94  TSRGLEGKDKRRLVKEVLSQECSDIVKLMESKRSKFCSKRIASIWKRMR----------V 153

Query: 152 SCCGIRDCVAFEVIHDRHSTTVAFLDGEGHEF 183
                R CVA EV+  RHS T+AFLD +G EF
Sbjct: 154 KWENSRSCVATEVVRGRHSITIAFLDNDGEEF 175

The following BLAST results are available for this feature:
BLAST of Csa5G453180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNA2_CUCSA1.8e-97100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G453180 PE=4 SV=1[more]
A0A0A0LY03_CUCSA9.9e-2748.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673520 PE=4 SV=1[more]
A0A0A0KTS7_CUCSA2.3e-1557.61Uncharacterized protein OS=Cucumis sativus GN=Csa_5G625990 PE=4 SV=1[more]
BLAST of Csa5G453180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195933|gb|KGN51110.1|2.6e-97100.00hypothetical protein Csa_5G453180 [Cucumis sativus][more]
gi|700211649|gb|KGN66745.1|1.4e-2648.00hypothetical protein Csa_1G673520 [Cucumis sativus][more]
gi|700197162|gb|KGN52339.1|3.3e-1557.61hypothetical protein Csa_5G625990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU116545cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G453180.1Csa5G453180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU116545CU116545transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G453180CSPI05G15690Wild cucumber (PI 183967)cpicuB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G453180Cucurbita pepo (Zucchini)cpecuB179
Csa5G453180Cucurbita pepo (Zucchini)cpecuB421
Csa5G453180Bottle gourd (USVL1VR-Ls)culsiB324
Csa5G453180Cucumber (Gy14) v2cgybcuB223
Csa5G453180Melon (DHL92) v3.6.1cumedB341
Csa5G453180Silver-seed gourdcarcuB0510
Csa5G453180Silver-seed gourdcarcuB0843
Csa5G453180Watermelon (97103) v2cuwmbB338
Csa5G453180Wax gourdcuwgoB454
Csa5G453180Cucurbita maxima (Rimu)cmacuB303
Csa5G453180Cucurbita maxima (Rimu)cmacuB728
Csa5G453180Cucurbita moschata (Rifu)cmocuB291
Csa5G453180Cucurbita moschata (Rifu)cmocuB720
Csa5G453180Melon (DHL92) v3.5.1cumeB363
Csa5G453180Watermelon (Charleston Gray)cuwcgB366
Csa5G453180Watermelon (97103) v1cuwmB410