CU104770 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU104770
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 15393283 .. 15401044 (-)
Sequence length	886

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGGAGCAGCAGTAAAGAGAAATGTTTTTATACATGGAAAATTATGAGTGCTCTGATTCTTCCTCATTTTGTTATCTTATATCAATACAAACATCAATTTACTTAAGATCACTGTCATGTAAGGGAAATCAAAGATTATTAATTCCTACAAAGTGAAAGTATTGATAACAAAACCAACATCTCCCATGCATGAGAAACTAGCAAGAAACCAACCATCTATAGTTGTCAGGACCATGTAAAAAAACAAGAACATATCAGCTGTCCTGCTTCTTCTTCTCTTCTTCCTTCATCTTCTTCTCCCACCTGCGCTTCTTGTATTGAAGCAACATATCTGGCATTTTCTCCATCAACCTTGCAGTGTTTTCCCGTTTCTCTGCTGCAATACGATCGCATTTGTGCCCTTTCCTCTTGGTTCTCATCTCTTTCCTCTCTGGATCATATGGCCAATCCTGCCCAGCAAGAAGTACTTCCTTGCGAAGTCTGGCTCGGTGACGTGCACTTATGCCCAGTGACTTCCATGCACCTAGTTCCCAGTAACCCCAAACCCCTTTGGATAGTTCATTCTTGTATTTTGCCAACTTCTCCTGCCATGGATACTGATACTCGCTGATGGCCTTCGCCACAGATTTGGCAGCCTTGCCTGCCATTCTTTCTTCGAAATGTTTCTTTAAGCCGAGACAGCAAGTAACCAAAACGGAGGGCCAACTCGGCTGGTCTGGTCGGAGTTGCAGTCACCGAATTCTTCTGATCGGAAATGGGGGAGAGGCAGTCGCCGGCGTTGTCTGATCGGAGGAGAGGGGCCGGACGTTGAAGATTTGGGAGGACTGGAGGAGAGTGAAGAGTGTGTTAGGGTTTGATTTTGACCAATGGGGCTGAACCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	3
gynoecious flower library	11
hermaphrodite flower library	8

Homology

[Close]

BLAST of CU104770 vs. TrEMBL
Match: A0A0A0L9K9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239330 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.5e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE
Sbjct: 1   MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY
Sbjct: 61  VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. TrEMBL
Match: E5GBA1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWK LGISARHRARLRKE
Sbjct: 1   MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKHLGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY
Sbjct: 61  VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. TrEMBL
Match: A0A059BMY0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01156 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.4e-51
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAA+SV K I+EYQYPW+EKL KY++ELSKGVWGYWELGAWK LGISAR RARLRKE
Sbjct: 77  MAGKAAQSVVKTIAEYQYPWREKLVKYRSELSKGVWGYWELGAWKPLGISARRRARLRKE 136

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAG+DWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPD+L  Y
Sbjct: 137 VLLAGEDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDLLQAY 187

Query: 434  493
           
Sbjct: 197  187

Query: 494  553
           
Sbjct: 257  187

Query: 554  613
           
Sbjct: 317  187

Query: 614  647
           
Sbjct: 377  187

[Close]

BLAST of CU104770 vs. TrEMBL
Match: A0A0D2UJ24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G103900 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAA+SV KA+ EYQYPW+EKLAKYK ELSKGVWGYWELGAWK LGISARHRARLRKE
Sbjct: 1   MAGKAAQSVVKAVGEYQYPWREKLAKYKVELSKGVWGYWELGAWKPLGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           +LLAGQDWPYDPE+KEMR+K KGHKCDRIAAE+RENTA LM+KMP+MLL Y
Sbjct: 61  MLLAGQDWPYDPEKKEMRSKMKGHKCDRIAAERRENTANLMQKMPEMLLAY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. TrEMBL
Match: W9SCK4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011881 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKS  KAI EYQYPW+EKL KYK+ELSKGVWGYW LGAWK LGISAR RARLRKE
Sbjct: 1   MAGKAAKSAVKAIGEYQYPWREKLVKYKDELSKGVWGYWHLGAWKPLGISARQRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAG+DWPYDPERKEMRTKRKGHK D+IAAEKRENTARLMEKMP+MLL Y
Sbjct: 61  VLLAGEDWPYDPERKEMRTKRKGHKVDKIAAEKRENTARLMEKMPEMLLAY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. NCBI nr
Match: gi|449456975|ref|XP_004146224.1| (PREDICTED: uncharacterized protein LOC101216182 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE
Sbjct: 1   MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY
Sbjct: 61  VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. NCBI nr
Match: gi|659133630|ref|XP_008466828.1| (PREDICTED: uncharacterized protein LOC103504139 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWK LGISARHRARLRKE
Sbjct: 1   MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKHLGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY
Sbjct: 61  VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. NCBI nr
Match: gi|470144709|ref|XP_004307990.1| (PREDICTED: uncharacterized protein LOC101314320 [Fragaria vesca subsp. vesca])

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAG+AAKSVAKAI EYQYPW+EKL KYK ELSKGVWGYW LGAWK+ GISARHRARLRKE
Sbjct: 1   MAGQAAKSVAKAIGEYQYPWREKLVKYKTELSKGVWGYWHLGAWKASGISARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAGQDWPYDPERKEMRTKRKGHK DRIAAEKRENTARLMEKMPDMLLQY
Sbjct: 61  VLLAGQDWPYDPERKEMRTKRKGHKVDRIAAEKRENTARLMEKMPDMLLQY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. NCBI nr
Match: gi|1009123271|ref|XP_015878452.1| (PREDICTED: uncharacterized protein LOC107414780 [Ziziphus jujuba])

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 100/111 (90.09%), Postives = 107/111 (96.40%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAAKSVAKAI EYQYPW+EKL KYK+ELSKGVWGYWELGAWK LG+SARHRARLRKE
Sbjct: 1   MAGKAAKSVAKAIGEYQYPWREKLVKYKDELSKGVWGYWELGAWKPLGVSARHRARLRKE 60

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAG+DWPYDPERKEMRTKRKGHK DRI+AEKRENTARLMEKMP+MLL+Y
Sbjct: 61  VLLAGEDWPYDPERKEMRTKRKGHKHDRISAEKRENTARLMEKMPEMLLEY 111

Query: 434  493
           
Sbjct: 121  111

Query: 494  553
           
Sbjct: 181  111

Query: 554  613
           
Sbjct: 241  111

Query: 614  647
           
Sbjct: 301  111

[Close]

BLAST of CU104770 vs. NCBI nr
Match: gi|629101915|gb|KCW67384.1| (hypothetical protein EUGRSUZ_F01156 [Eucalyptus grandis])

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = -1


Query: 314 MAGKAAKSVAKAISEYQYPWQEKLAKYKNELSKGVWGYWELGAWKSLGISARHRARLRKE 373
           MAGKAA+SV K I+EYQYPW+EKL KY++ELSKGVWGYWELGAWK LGISAR RARLRKE
Sbjct: 77  MAGKAAQSVVKTIAEYQYPWREKLVKYRSELSKGVWGYWELGAWKPLGISARRRARLRKE 136

Query: 374 VLLAGQDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDMLLQY 433
           VLLAG+DWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPD+L  Y
Sbjct: 137 VLLAGEDWPYDPERKEMRTKRKGHKCDRIAAEKRENTARLMEKMPDLLQAY 187

Query: 434  493
           
Sbjct: 197  187

Query: 494  553
           
Sbjct: 257  187

Query: 554  613
           
Sbjct: 317  187

Query: 614  647
           
Sbjct: 377  187

The following BLAST results are available for this feature:

BLAST of CU104770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9K9_CUCSA	3.5e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239330 PE=4 SV=1	[more]
E5GBA1_CUCME	1.3e-57	99.10	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A059BMY0_EUCGR	5.4e-51	87.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01156 PE=4 SV=1	[more]
A0A0D2UJ24_GOSRA	2.7e-50	85.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G103900 PE=4 SV=1	[more]
W9SCK4_9ROSA	3.5e-50	87.39	Uncharacterized protein OS=Morus notabilis GN=L484_011881 PE=4 SV=1	[more]

BLAST of CU104770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456975\|ref\|XP_004146224.1\|	7.3e-57	100.00	PREDICTED: uncharacterized protein LOC101216182 [Cucumis sativus]	[more]
gi\|659133630\|ref\|XP_008466828.1\|	2.8e-56	99.10	PREDICTED: uncharacterized protein LOC103504139 [Cucumis melo]	[more]
gi\|470144709\|ref\|XP_004307990.1\|	1.6e-51	91.89	PREDICTED: uncharacterized protein LOC101314320 [Fragaria vesca subsp. vesca]	[more]
gi\|1009123271\|ref\|XP_015878452.1\|	2.7e-51	90.09	PREDICTED: uncharacterized protein LOC107414780 [Ziziphus jujuba]	[more]
gi\|629101915\|gb\|KCW67384.1\|	1.1e-49	87.39	hypothetical protein EUGRSUZ_F01156 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G239310	Csa3G239310	gene
Csa3G239330	Csa3G239330	gene
Csa3G239320	Csa3G239320	gene
Csa3G239300	Csa3G239300	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LMHWI	FKNP3UI02LMHWI	EST
FKNP3UI02MV8AR	FKNP3UI02MV8AR	EST
FKNP3UI02OR7X2	FKNP3UI02OR7X2	EST
G0003803	G0003803	EST
G0005185	G0005185	EST
G0033685	G0033685	EST
G0035061	G0035061	EST
G0058011	G0058011	EST
G0061893	G0061893	EST
G0070152	G0070152	EST
G0076053	G0076053	EST
G0093837	G0093837	EST
G0125773	G0125773	EST
G0183590	G0183590	EST
H0040431	H0040431	EST
H0055170	H0055170	EST
H0064943	H0064943	EST
H0078567	H0078567	EST
H0097318	H0097318	EST
H0099951	H0099951	EST
H0150249	H0150249	EST
H0173908	H0173908	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36781	FAMILY NOT NAMED	coord: 2..130 score: 2.3
None	No IPR available	PANTHER	PTHR36781:SF1	SUBFAMILY NOT NAMED	coord: 2..130 score: 2.3