Csa3G239320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G239320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15398890 .. 15399298 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAGTGAGTTCGACATAATAGCCACTTTTTGTTGTGTAGTTTTTCCATTCAGCGGGTTGCTTCTTTCATCATTGTATTTTTTGAAGAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGTTATTTTCACCAATTTTCCATTGCTAGACTCAAGTTGTAGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

mRNA sequence

ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

Coding sequence (CDS)

ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

Protein sequence

MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGRPDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC*
Homology
[Close]
BLAST of Csa3G239320 vs. TrEMBL
Match: A0A0A0L7B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239320 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.1e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60
          MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR
Sbjct: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60

Query: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 95
          PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC
Sbjct: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 94

[Close]
BLAST of Csa3G239320 vs. NCBI nr
Match: gi|700202535|gb|KGN57668.1| (hypothetical protein Csa_3G239320 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 7.3e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60
          MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR
Sbjct: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60

Query: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 95
          PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC
Sbjct: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 94

The following BLAST results are available for this feature:
BLAST of Csa3G239320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7B0_CUCSA5.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239320 PE=4 SV=1[more]
BLAST of Csa3G239320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202535|gb|KGN57668.1|7.3e-51100.00hypothetical protein Csa_3G239320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU104770cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G239320.1Csa3G239320.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104770CU104770transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G239320Cucurbita maxima (Rimu)cmacuB286
Csa3G239320Cucurbita maxima (Rimu)cmacuB321
Csa3G239320Cucurbita maxima (Rimu)cmacuB409
Csa3G239320Cucurbita maxima (Rimu)cmacuB412
Csa3G239320Cucurbita moschata (Rifu)cmocuB273
Csa3G239320Cucurbita moschata (Rifu)cmocuB310
Csa3G239320Cucurbita moschata (Rifu)cmocuB399
Csa3G239320Cucurbita moschata (Rifu)cmocuB401
Csa3G239320Cucurbita moschata (Rifu)cmocuB595
Csa3G239320Melon (DHL92) v3.5.1cumeB178
Csa3G239320Melon (DHL92) v3.5.1cumeB238
Csa3G239320Watermelon (Charleston Gray)cuwcgB205
Csa3G239320Watermelon (Charleston Gray)cuwcgB230
Csa3G239320Watermelon (97103) v1cuwmB243
Csa3G239320Watermelon (97103) v1cuwmB259
Csa3G239320Cucurbita pepo (Zucchini)cpecuB036
Csa3G239320Cucurbita pepo (Zucchini)cpecuB040
Csa3G239320Cucurbita pepo (Zucchini)cpecuB206
Csa3G239320Cucurbita pepo (Zucchini)cpecuB722
Csa3G239320Bottle gourd (USVL1VR-Ls)culsiB152
Csa3G239320Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G239320Cucumber (Gy14) v2cgybcuB109
Csa3G239320Cucumber (Gy14) v2cgybcuB208
Csa3G239320Melon (DHL92) v3.6.1cumedB160
Csa3G239320Melon (DHL92) v3.6.1cumedB238
Csa3G239320Silver-seed gourdcarcuB0567
Csa3G239320Silver-seed gourdcarcuB0569
Csa3G239320Silver-seed gourdcarcuB1001
Csa3G239320Watermelon (97103) v2cuwmbB174
Csa3G239320Watermelon (97103) v2cuwmbB215
Csa3G239320Wax gourdcuwgoB263
Csa3G239320Wax gourdcuwgoB283
Csa3G239320Cucumber (Chinese Long) v2cucuB098
Csa3G239320Cucumber (Gy14) v1cgycuB003
Csa3G239320Cucumber (Gy14) v1cgycuB308