Csa3G239320.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G239320.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 15398890 .. 15399298 (+)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAGTGAGTTCGACATAATAGCCACTTTTTGTTGTGTAGTTTTTCCATTCAGCGGGTTGCTTCTTTCATCATTGTATTTTTTGAAGAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGTTATTTTCACCAATTTTCCATTGCTAGACTCAAGTTGTAGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

mRNA sequence

ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

Coding sequence (CDS)

ATGGCACGAAAATCTTCGTCCTGCACCTCGAATGGTAAAGGTGAAATTTGTAGTTGCAAGGGTCATGTTGCAAGGAATGATAAGAGGACGAGCCAGTGGAGAGCCTTCCATGAGAGGATGAGAGATTGTGTTGATGATCTACATTTTTCGGGTGAAAAGCTTCCGATCAATGTGGGTAGACCAGATGGGGGTGGGGTGTTGGGTGGTGGTCATGGCGGTGGGACGGTTATGGTTGATTGGGATAGGACAGGGGAGGAGAGAGGAGAGAGGAGAGAGCATTGCTAA

Protein sequence

MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGRPDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC*
Homology
[Close]
BLAST of Csa3G239320.1 vs. TrEMBL
Match: A0A0A0L7B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239320 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.1e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60
          MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR
Sbjct: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60

Query: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 95
          PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC
Sbjct: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 94

[Close]
BLAST of Csa3G239320.1 vs. NCBI nr
Match: gi|700202535|gb|KGN57668.1| (hypothetical protein Csa_3G239320 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 7.3e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60
          MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR
Sbjct: 1  MARKSSSCTSNGKGEICSCKGHVARNDKRTSQWRAFHERMRDCVDDLHFSGEKLPINVGR 60

Query: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 95
          PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC
Sbjct: 61 PDGGGVLGGGHGGGTVMVDWDRTGEERGERREHC 94

The following BLAST results are available for this feature:
BLAST of Csa3G239320.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7B0_CUCSA5.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G239320 PE=4 SV=1[more]
BLAST of Csa3G239320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202535|gb|KGN57668.1|7.3e-51100.00hypothetical protein Csa_3G239320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G239320Csa3G239320gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G239320.1Csa3G239320.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G239320.1.cds1Csa3G239320.1.cds1CDS
Csa3G239320.1.cds2Csa3G239320.1.cds2CDS
Csa3G239320.1.cds3Csa3G239320.1.cds3CDS